Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 0.0e+00 2312.0 1382 100.0
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.0e-207 728.4 1467 44.7
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 7.4e-198 695.7 1271 46.6
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 3.7e-197 693.3 1466 43.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.1e-196 690.3 1474 42.1
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 6.5e-194 682.6 1432 44.5
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 5.5e-193 679.5 1482 41.7
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 5.1e-191 672.9 1550 39.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 1.3e-189 668.3 1489 40.9
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.6e-189 667.9 1453 39.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.1e-188 665.2 1450 42.1
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.8e-188 664.5 1461 41.1
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 9.0e-188 662.1 1475 43.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.2e-187 661.8 1470 40.5
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.4e-185 654.8 1541 40.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.2e-184 651.7 1472 42.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.0e-183 648.7 1467 41.5
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 8.8e-183 645.6 1527 39.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 2.6e-182 644.0 1597 38.9
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.3e-182 643.7 1466 41.4
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 5.7e-182 642.9 1503 39.9
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 7.4e-182 642.5 1517 41.0
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.3e-181 641.7 1461 41.3
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 2.2e-181 641.0 1465 40.8
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.7e-181 640.2 1466 40.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 6.3e-181 639.4 1469 42.1
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.8e-180 637.9 1465 40.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 2.6e-179 634.0 1514 40.4
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 4.5e-179 633.3 1442 41.1
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.2e-178 630.9 1501 40.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 6.5e-178 629.4 1423 40.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 4.2e-177 626.7 1481 41.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 5.5e-177 626.3 1452 39.8
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 5.2e-175 619.8 1537 38.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.5e-174 618.2 1476 40.5
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.4e-174 616.7 1477 40.6
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.2e-173 614.4 1491 40.2
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.8e-173 613.2 1504 39.9
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.1e-172 610.1 1466 40.2
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 5.3e-172 609.8 1492 40.4
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.5e-171 607.1 1526 39.4
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.7e-170 604.7 1476 39.1
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.9e-170 604.0 1466 38.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 7.2e-169 599.4 1510 39.7
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 9.4e-169 599.0 1513 38.1
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.2e-168 598.6 1500 40.2
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 2.1e-168 597.8 1489 39.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 3.6e-168 597.0 1483 39.0
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.3e-167 594.3 1228 42.3
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.3e-165 588.6 1483 39.9
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.7e-165 588.2 1521 38.1
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 2.4e-164 584.3 1511 38.9
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.1e-164 582.4 1486 39.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 8.5e-162 575.9 1418 38.4
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 2.1e-160 571.2 1352 38.8
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 6.1e-160 569.7 1447 39.9
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.0e-158 564.7 1457 39.6
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 4.4e-158 563.5 1455 39.6
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 9.8e-158 562.4 1473 40.3
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.7e-157 561.6 1472 40.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.8e-157 560.8 1427 38.8
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.5e-155 553.9 1555 36.1
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 7.7e-155 552.7 1475 38.0
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.2e-154 551.2 1525 37.6
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.1e-152 544.7 1562 38.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.0e-151 540.4 1076 42.6
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.3e-146 524.6 1498 35.3
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 2.5e-145 521.2 1672 35.0
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 9.8e-142 509.2 1264 39.4
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 9.2e-140 502.7 1450 38.8
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 6.6e-138 496.5 1493 38.7
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 5.6e-137 493.4 1457 38.6
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.3e-135 488.0 743 49.5
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 6.8e-135 486.5 1469 35.9
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 8.9e-135 486.1 1252 39.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.6e-134 484.6 1473 36.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 3.4e-134 484.2 1488 34.5
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 9.8e-134 482.6 1507 35.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.2e-132 477.6 1503 35.4
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.0e-130 472.6 1413 36.3
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.3e-130 471.5 1477 34.7
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 5.0e-130 470.3 1479 35.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 9.9e-126 456.1 1493 36.7
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.9e-125 454.5 1442 38.2
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 4.9e-125 453.8 1359 36.1
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.2e-123 449.1 1498 36.2
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.6e-122 443.4 1392 32.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 6.8e-119 433.3 1465 36.5
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 8.9e-119 433.0 1465 36.2
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.2e-118 432.6 1507 34.3
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 7.6e-118 429.9 1489 33.6
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 6.0e-115 420.2 1466 36.0
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.6e-112 412.1 1464 35.9
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-111 408.7 1473 34.6
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.8e-111 408.7 1473 34.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.2e-110 406.0 1330 35.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.2e-109 401.7 1340 35.2
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 9.3e-108 396.4 1511 34.1
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 9.6e-105 386.3 1413 36.7
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.6e-104 385.6 1324 35.3
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 4.5e-94 350.9 1440 29.3
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.3e-93 349.4 1211 31.3
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.2e-91 342.8 985 34.0
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.8e-79 302.4 616 39.3
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.9e-78 297.4 609 45.8
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.0e-77 296.6 833 37.6
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.9e-73 282.3 1295 29.2
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 4.5e-70 271.2 1374 26.4
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.5e-69 266.9 719 34.6
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 4.7e-67 261.2 1505 28.0
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 7.9e-67 260.4 1173 29.9
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 2.2e-56 225.7 386 36.5
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.0e-50 206.8 822 33.8
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.7e-45 189.5 400 41.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.7e-45 189.5 1414 24.8
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 3.6e-35 155.2 213 46.9
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 3.1e-31 142.1 454 32.4
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.3e-28 132.1 175 41.1
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 6.1e-27 127.9 335 34.9
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 3.4e-25 122.1 373 37.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.7e-24 118.6 93 60.2
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 4.1e-23 115.2 84 67.9
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.8e-22 110.9 72 69.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.6e-19 102.1 69 69.6
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 4.0e-18 98.6 249 37.3
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 5.2e-18 98.2 64 73.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.2e-17 97.1 216 40.3
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.5e-17 96.7 288 28.8
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 6.4e-16 91.3 146 42.5
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-14 87.0 64 60.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.6e-13 81.3 49 69.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 3.3e-12 79.0 304 24.7
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 2.0e-09 69.7 50 64.0
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 5.8e-09 68.2 73 47.9
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.3e-08 67.0 53 62.3
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 3.7e-08 65.5 77 42.9
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 3.7e-08 65.5 450 26.2
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.7e-08 65.5 94 42.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.1e-07 63.9 43 65.1


User provided reference genes

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