Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G192 Amborella trichopoda HOM05D000448 ORTHO05D000291 1.1e-183 646.7 375 100.0
ATR0315G078 Amborella trichopoda HOM05D027900 ORTHO05D002637 3.2e-18 97.1 328 29.6
ATR0315G141 Amborella trichopoda HOM05D027900 ORTHO05D031087 6.2e-14 82.8 252 31.3
MBI01_g06189_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 8.0e-14 82.4 284 27.5
TAR383G0566 Trochodendron aralioides HOM05D000448 ORTHO05D000313 8.9e-13 79.0 329 24.6
Atru.chr2.622 Acer truncatum HOM05D000448 ORTHO05D000291 2.6e-12 77.4 281 25.6
Ah.16g105930 Amaranthus hybridus HOM05D000448 ORTHO05D000291 7.5e-12 75.9 298 31.2
ECA234G0709 Erigeron canadensis HOM05D000448 ORTHO05D000291 9.8e-12 75.5 305 25.2
CSS0031680 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.3e-11 75.1 321 24.6
Rhsim07G0188200 Rhododendron simsii HOM05D000448 ORTHO05D000291 2.9e-11 73.9 280 27.5
Hma1.2p1_0196F.1_g085070 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 3.7e-11 73.6 336 29.2
Rhsim05G0013100 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.7e-11 73.6 271 28.8
CiPaw.03G111800 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.9e-11 73.2 411 23.6
AUR62009255 Chenopodium quinoa HOM05D000448 ORTHO05D000291 4.9e-11 73.2 358 22.6
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 8.3e-11 72.4 343 27.7
Oeu034188.1 Olea europaea HOM05D000448 ORTHO05D000291 2.4e-10 70.9 273 26.4
MD15G1053400 Malus domestica HOM05D000448 ORTHO05D000291 3.2e-10 70.5 260 29.2
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.1e-10 70.1 295 27.5
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 5.4e-10 69.7 337 24.0
Cpa.g.sc277.5 Carica papaya HOM05D000448 ORTHO05D000291 7.0e-10 69.3 353 27.2
TAR628G1068 Trochodendron aralioides HOM05D000448 ORTHO05D000291 7.0e-10 69.3 330 25.8
CANSAT25G3158 Cannabis sativa HOM05D000448 ORTHO05D000291 1.2e-09 68.6 350 27.1
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 1.2e-09 68.6 367 24.0
Sc09g0010010 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.2e-09 68.6 330 28.5
AUR62043848 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.6e-09 68.2 356 23.9
PSO063G6971 Papaver somniferum HOM05D000480 ORTHO05D000313 1.6e-09 68.2 307 26.1
CSS0018902 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.0e-09 67.8 265 28.3
AUR62043844 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.0e-09 67.8 309 23.9
Haze_18768 Corylus avellana HOM05D000448 ORTHO05D000291 2.0e-09 67.8 123 42.3
ECA234G4737 Erigeron canadensis HOM05D000448 ORTHO05D000291 2.0e-09 67.8 325 24.6
Thecc.09G133100 Theobroma cacao HOM05D000448 ORTHO05D000291 2.0e-09 67.8 305 23.6
Cfa019716 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.7e-09 67.4 129 27.9
Peaxi162Scf00565g00821 Petunia axillaris HOM05D000448 ORTHO05D000291 2.7e-09 67.4 263 26.6
CAN.G756.43 Capsicum annuum HOM05D000480 ORTHO05D000313 3.5e-09 67.0 355 26.2
Oeu047502.1 Olea europaea HOM05D000448 ORTHO05D000291 4.6e-09 66.6 361 23.3
PSO478G0673 Papaver somniferum HOM05D000448 ORTHO05D000291 4.6e-09 66.6 360 26.9
AUR62009254 Chenopodium quinoa HOM05D000480 ORTHO05D000313 6.0e-09 66.2 118 34.7
Manes.08G063800 Manihot esculenta HOM05D000480 ORTHO05D000313 6.0e-09 66.2 345 26.1
AUR62043845 Chenopodium quinoa HOM05D000448 ORTHO05D000291 7.8e-09 65.9 352 23.0
Migut.A00098 Erythranthe guttata HOM05D000448 ORTHO05D000291 1.0e-08 65.5 266 26.7
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 1.0e-08 65.5 272 24.3
MBI11_g10514_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.0e-08 65.5 298 24.5
PGR044G1390 Punica granatum HOM05D000448 ORTHO05D000291 1.0e-08 65.5 284 23.6
SalBow4G1636 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.0e-08 65.5 183 29.5
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.3e-08 65.1 356 23.6
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 1.3e-08 65.1 384 23.4
Haze_18750 Corylus avellana HOM05D000448 ORTHO05D000291 1.3e-08 65.1 124 43.5
PSO063G0367 Papaver somniferum HOM05D000480 ORTHO05D000313 1.3e-08 65.1 333 29.7
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.3e-08 65.1 276 26.8
vmacro03794 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.3e-08 65.1 244 24.6
Duzib150G0219 Durio zibethinus HOM05D000448 ORTHO05D000291 1.7e-08 64.7 268 24.3
arahy.Tifrunner.gnm1.ann1.FECP0X Arachis hypogaea HOM05D000448 ORTHO05D000291 2.3e-08 64.3 379 27.4
Thecc.09G132900 Theobroma cacao HOM05D000448 ORTHO05D000291 2.3e-08 64.3 289 23.9
MSTRG.10528 Avicennia marina HOM05D000448 ORTHO05D000291 3.0e-08 63.9 273 24.9
Sc23g0005320 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.0e-08 63.9 344 28.8
TAR383G0082 Trochodendron aralioides HOM05D000448 ORTHO05D000291 3.0e-08 63.9 257 29.2
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 3.9e-08 63.5 397 28.5
Sc09g0010080 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.9e-08 63.5 268 25.0
Solyc08g062330.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 3.9e-08 63.5 262 25.2
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 5.0e-08 63.2 297 25.3
MSTRG.12044 Avicennia marina HOM05D000448 ORTHO05D000291 6.6e-08 62.8 305 25.2
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 6.6e-08 62.8 243 25.1
Migut.A00096 Erythranthe guttata HOM05D000448 ORTHO05D000291 6.6e-08 62.8 252 27.0
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 6.6e-08 62.8 273 24.5
Sopen08g017860 Solanum pennellii HOM05D000448 ORTHO05D000291 6.6e-08 62.8 262 24.8
Actinidia29316 Actinidia chinensis HOM05D000448 ORTHO05D000291 8.6e-08 62.4 265 27.9
MBI14_g40913_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 8.6e-08 62.4 333 23.4
Migut.A00095 Erythranthe guttata HOM05D000448 ORTHO05D000291 1.1e-07 62.0 299 25.4
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 1.1e-07 62.0 387 23.0
MD15G1213100 Malus domestica HOM05D000448 ORTHO05D000291 1.1e-07 62.0 284 24.6
RcHm_v2.0_Chr1g0341001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.1e-07 62.0 309 24.6
CiPaw.03G112400 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.5e-07 61.6 409 22.0
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 1.5e-07 61.6 259 25.9
SalBow3G2035 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.5e-07 61.6 335 25.1
TAR636G1885 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.5e-07 61.6 245 27.8
Actinidia29315 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.9e-07 61.2 246 26.0
CSS0011908 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.9e-07 61.2 412 26.0
AUR62043768 Chenopodium quinoa HOM05D000448 ORTHO05D000313 1.9e-07 61.2 246 24.0
Haze_18751 Corylus avellana HOM05D000448 ORTHO05D000291 1.9e-07 61.2 120 45.8
Haze_18775 Corylus avellana HOM05D000448 ORTHO05D000291 1.9e-07 61.2 124 42.7
Gorai.004G281500 Gossypium raimondii HOM05D000448 ORTHO05D000313 1.9e-07 61.2 330 26.1
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 1.9e-07 61.2 357 26.3
Actinidia25704 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.5e-07 60.8 301 23.9
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 2.5e-07 60.8 360 24.2
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 2.5e-07 60.8 369 23.6
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.5e-07 60.8 270 24.8
AUR62044581 Chenopodium quinoa HOM05D000480 ORTHO05D000313 2.5e-07 60.8 118 31.4
AUR62044582 Chenopodium quinoa HOM05D000480 ORTHO05D000313 2.5e-07 60.8 118 31.4
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 2.5e-07 60.8 296 23.6
RcHm_v2.0_Chr2g0094191 Rosa chinensis HOM05D000448 ORTHO05D000291 2.5e-07 60.8 347 25.9
Sc23g0005360 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.5e-07 60.8 337 26.1
AUR62043586 Chenopodium quinoa HOM05D000448 ORTHO05D000291 3.3e-07 60.5 199 26.1
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 3.3e-07 60.5 269 24.5
Thecc.09G081800 Theobroma cacao HOM05D000448 ORTHO05D000291 3.3e-07 60.5 272 25.7
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 4.3e-07 60.1 319 23.8
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 4.3e-07 60.1 245 24.1
Thecc.09G104500 Theobroma cacao HOM05D000448 ORTHO05D000291 4.3e-07 60.1 324 24.4
Cfa007125 Carpinus fangiana HOM05D000448 ORTHO05D000291 5.6e-07 59.7 337 23.7
AUR62043857 Chenopodium quinoa HOM05D000448 ORTHO05D000291 5.6e-07 59.7 236 26.3
Duzib187G1896 Durio zibethinus HOM05D000480 ORTHO05D000313 5.6e-07 59.7 316 24.4
Gohir.D08G263400 Gossypium hirsutum HOM05D000448 ORTHO05D000313 5.6e-07 59.7 330 25.8
MBI14_g45558_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 5.6e-07 59.7 307 22.8
PSO717G0093 Papaver somniferum HOM05D009007 ORTHO05D000291 5.6e-07 59.7 299 29.4
Actinidia25224 Actinidia chinensis HOM05D000448 ORTHO05D000291 7.3e-07 59.3 242 27.7
Eucgr.L00448 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.3e-07 59.3 358 25.7
AT1G34050 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 9.5e-07 58.9 331 22.7
AUR62008891 Chenopodium quinoa HOM05D000448 ORTHO05D000291 9.5e-07 58.9 362 21.3
FAN27G1920 Fragaria x ananassa HOM05D000448 ORTHO05D000291 9.5e-07 58.9 275 25.8
Peaxi162Scf01379g00001 Petunia axillaris HOM05D000264 ORTHO05D002637 9.5e-07 58.9 47 46.8
Sp6g16660 Schrenkiella parvula HOM05D000454 ORTHO05D002637 9.5e-07 58.9 344 22.1
Actinidia03546 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.2e-06 58.5 263 27.8
ATR0315G133 Amborella trichopoda HOM05D000448 ORTHO05D000313 1.2e-06 58.5 128 28.9
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 1.2e-06 58.5 382 22.8
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.2e-06 58.5 287 26.1
Gohir.A08G242600 Gossypium hirsutum HOM05D000448 ORTHO05D000313 1.2e-06 58.5 292 25.0
Hma1.2p1_2284F.1_g318890 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 1.2e-06 58.5 115 29.6
Nn1g04197 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.2e-06 58.5 305 25.2
FvH4_2g31340 Fragaria vesca HOM05D000448 ORTHO05D000291 1.6e-06 58.2 253 26.5
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.6e-06 58.2 253 26.5
Sc23g0005330 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.6e-06 58.2 375 26.4
GSVIVG01035440001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.6e-06 58.2 275 24.0
Dinv25130 Davidia involucrata HOM05D000480 ORTHO05D000313 2.1e-06 57.8 340 23.8
MBI14_g28629_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 2.1e-06 57.8 268 23.1
Nn3g19311 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.1e-06 57.8 255 24.7
Nn6g33764 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.1e-06 57.8 308 26.3
TAR383G0154 Trochodendron aralioides HOM05D000376 ORTHO05D000237 2.1e-06 57.8 146 29.5
Eucgr.D00030 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.8e-06 57.4 238 26.1
FAN15G3761 Fragaria x ananassa HOM05D000448 ORTHO05D000291 2.8e-06 57.4 253 26.1
Nn8g40300 Nelumbo nucifera HOM05D000480 ORTHO05D000313 2.8e-06 57.4 270 25.2
Nn8g41108 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.8e-06 57.4 118 33.1
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 2.8e-06 57.4 110 33.6
Sc09g0010050 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.8e-06 57.4 264 24.6
vmacro03798 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.8e-06 57.4 281 24.9
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 3.6e-06 57.0 296 24.7
BcaB01g01576 Brassica carinata HOM05D000480 ORTHO05D000313 3.6e-06 57.0 306 23.5
CANSAT25G2897 Cannabis sativa HOM05D000448 ORTHO05D000291 3.6e-06 57.0 325 23.1
COL.COLO4_21112 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.6e-06 57.0 238 24.8
FAN20G0495 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.6e-06 57.0 253 26.1
PSO717G0076 Papaver somniferum HOM05D009007 ORTHO05D000291 3.6e-06 57.0 211 28.0
Potri.006G223800 Populus trichocarpa HOM05D000448 ORTHO05D000291 3.6e-06 57.0 268 26.5
QL02p000380 Quercus lobata HOM05D000448 ORTHO05D000291 3.6e-06 57.0 265 26.0
TAR374G0158 Trochodendron aralioides HOM05D000480 ORTHO05D000313 3.6e-06 57.0 316 25.3
Gohir.A03G003850 Gossypium hirsutum HOM05D000480 ORTHO05D000313 4.7e-06 56.6 327 23.5
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 4.7e-06 56.6 289 22.8
Prupe.4G144900 Prunus persica HOM05D000264 ORTHO05D000152 4.7e-06 56.6 252 23.8
Sp1g08940 Schrenkiella parvula HOM05D000454 ORTHO05D002637 4.7e-06 56.6 371 21.6
BcaB05g22330 Brassica carinata HOM05D000480 ORTHO05D000313 6.2e-06 56.2 315 24.8
CiPaw.04G146800 Carya illinoinensis HOM05D000448 ORTHO05D000291 6.2e-06 56.2 242 26.4
Lj7C682G5 Lonicera japonica HOM05D000544 ORTHO05D000291 6.2e-06 56.2 271 25.8
QL01p009420 Quercus lobata HOM05D000480 ORTHO05D000313 6.2e-06 56.2 283 25.8
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 6.2e-06 56.2 338 23.7
PGSC0003DMG400031159 Solanum tuberosum HOM05D000480 ORTHO05D000313 6.2e-06 56.2 375 23.2
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 8.1e-06 55.8 355 22.5
CANSAT56G0856 Cannabis sativa HOM05D000448 ORTHO05D000291 8.1e-06 55.8 331 22.7
Gohir.A12G213100 Gossypium hirsutum HOM05D000480 ORTHO05D000313 8.1e-06 55.8 257 25.3
Medtr7g099580 Medicago truncatula HOM05D000448 ORTHO05D000313 8.1e-06 55.8 120 29.2
SalBow1G7265 Salvia bowleyana HOM05D000448 ORTHO05D000291 8.1e-06 55.8 263 25.5


User provided reference genes

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