Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.3e-94 349.0 187 100.0
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.1e-43 180.6 193 58.5
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 5.4e-27 125.2 219 38.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 5.4e-27 125.2 195 42.6
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 4.6e-26 122.1 195 43.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.3e-25 119.8 194 42.8
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 6.6e-25 118.2 197 42.1
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.6e-25 117.9 195 43.1
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.6e-25 117.9 195 44.6
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 8.6e-25 117.9 195 44.6
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 8.6e-25 117.9 202 41.1
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.5e-24 117.1 194 42.3
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 9.5e-24 114.4 195 43.1
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 9.5e-24 114.4 195 43.1
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.2e-23 114.0 211 43.6
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.6e-23 113.6 195 43.6
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.8e-23 112.8 194 39.7
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.7e-23 112.1 201 40.8
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.1e-22 110.9 205 40.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.1e-22 110.9 196 41.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-22 110.9 195 42.1
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.8e-22 110.2 194 40.2
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-22 110.2 194 40.2
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 3.1e-22 109.4 195 39.0
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-22 109.4 192 41.1
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.0e-22 109.0 203 39.4
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 4.0e-22 109.0 217 37.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 6.8e-22 108.2 195 38.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.8e-22 108.2 195 41.0
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 6.8e-22 108.2 196 40.3
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 8.9e-22 107.8 195 41.5
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.9e-22 107.8 194 39.7
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 8.9e-22 107.8 196 40.8
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 8.9e-22 107.8 194 42.3
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-21 107.5 195 40.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-21 107.5 195 40.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.0e-21 106.7 196 40.3
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.0e-21 106.7 196 39.3
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.6e-21 106.3 198 39.4
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 3.4e-21 105.9 196 41.8
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 3.4e-21 105.9 196 39.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.8e-21 105.1 198 39.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 7.5e-21 104.8 191 40.8
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.3e-20 104.0 197 39.1
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-20 103.6 197 39.6
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.9e-20 102.8 199 38.7
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.7e-20 102.4 169 43.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 3.7e-20 102.4 198 39.4
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.7e-20 102.4 193 39.9
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.9e-20 102.1 190 38.9
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.9e-20 102.1 190 38.9
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.9e-20 102.1 190 38.9
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 6.4e-20 101.7 199 38.2
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.4e-20 101.7 199 39.7
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 6.4e-20 101.7 192 40.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 6.4e-20 101.7 194 42.3
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.1e-19 100.9 196 38.8
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.1e-19 100.9 194 41.2
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.1e-19 100.9 199 37.2
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-19 100.5 198 38.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-19 100.5 198 38.9
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.9e-19 100.1 199 38.2
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.4e-19 99.8 198 38.9
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.4e-19 99.8 190 38.4
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 3.2e-19 99.4 193 39.4
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.2e-19 99.4 195 37.9
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.2e-19 99.4 195 40.5
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.2e-19 99.4 201 38.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 4.1e-19 99.0 196 40.3
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 5.4e-19 98.6 202 38.6
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.2e-18 97.4 204 37.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.2e-18 97.4 200 39.0
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.6e-18 97.1 204 36.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-18 96.7 197 39.1
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-18 96.7 197 38.6
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-18 96.7 197 39.1
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-18 96.7 197 39.1
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.1e-18 96.7 197 38.6
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.7e-18 96.3 194 41.2
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.7e-18 96.3 194 40.7
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 3.5e-18 95.9 195 37.4
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 3.5e-18 95.9 197 38.6
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 4.6e-18 95.5 187 38.5
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.6e-18 95.5 194 39.2
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.6e-18 95.5 196 37.2
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 4.6e-18 95.5 196 37.2
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 7.8e-18 94.7 197 37.6
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.0e-17 94.4 197 38.1
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.0e-17 94.4 201 39.8
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-17 94.0 185 39.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-17 94.0 198 36.4
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-17 94.0 198 36.4
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.7e-17 93.6 197 37.1
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-17 93.2 197 37.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.3e-17 93.2 190 39.5
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.3e-17 93.2 196 36.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.0e-17 92.8 209 34.9
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 3.9e-17 92.4 197 37.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.6e-17 91.7 200 36.5
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 6.6e-17 91.7 196 36.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 8.6e-17 91.3 197 37.1
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.5e-16 90.5 201 36.8
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.5e-16 90.5 198 39.4
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.9e-16 90.1 164 40.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.5e-16 89.7 192 37.0
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.3e-16 89.4 210 33.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.3e-16 89.4 209 34.0
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 3.3e-16 89.4 195 36.4
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.6e-16 88.6 199 34.7
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 5.6e-16 88.6 196 35.2
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.3e-16 88.2 199 39.2
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 7.3e-16 88.2 199 37.7
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 9.5e-16 87.8 196 36.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-15 87.4 189 38.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 3.6e-15 85.9 197 39.6
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.6e-15 85.9 196 35.7
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.7e-15 85.5 201 34.3
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 6.2e-15 85.1 193 40.4
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.4e-14 84.0 194 36.1
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.4e-14 84.0 202 37.6
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.3e-14 83.2 196 35.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.3e-14 83.2 190 35.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.3e-14 83.2 165 38.2
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.1e-14 82.8 196 38.3
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.0e-13 80.1 193 33.7
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.4e-13 79.3 208 35.6
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 5.8e-13 78.6 196 34.7
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 9.9e-13 77.8 87 54.0
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.2e-12 76.6 175 36.0
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 4.9e-12 75.5 165 37.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.4e-12 75.1 167 35.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 6.4e-12 75.1 191 35.1
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 8.4e-12 74.7 195 34.4
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.9e-11 73.6 185 36.8
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 2.4e-11 73.2 178 35.4
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.2e-11 72.8 90 51.1
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.2e-11 72.8 90 51.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.6e-10 68.9 185 33.5
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 7.8e-10 68.2 187 32.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.0e-09 67.8 192 34.4
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.0e-09 67.8 74 56.8
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.7e-09 67.0 37 78.4
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.7e-09 67.0 193 35.8
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 3.9e-09 65.9 37 78.4
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.9e-09 65.9 37 78.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.9e-09 65.9 54 64.8
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 3.9e-09 65.9 167 36.5
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.9e-08 63.5 215 30.2
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.5e-08 63.2 37 73.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 7.3e-08 61.6 73 54.8
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.6e-08 61.2 55 58.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.1e-07 60.1 37 70.3
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.1e-07 60.1 39 69.2
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 3.6e-07 59.3 79 48.1
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 8.1e-07 58.2 79 48.1
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.1e-06 57.8 114 38.6
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.1e-06 56.2 174 33.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.0e-06 55.8 37 67.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.8e-06 55.1 55 52.7


User provided reference genes

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