Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.3e-114 416.0 283 100.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.9e-52 210.3 167 69.5
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.5e-52 209.9 146 76.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.3e-52 209.5 146 75.3
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.3e-52 209.5 146 75.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.3e-52 209.5 147 76.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 4.3e-52 209.1 161 70.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.3e-52 209.1 158 72.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.3e-52 209.1 146 76.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.3e-52 209.1 146 76.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 7.3e-52 208.4 158 72.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 7.3e-52 208.4 146 75.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 7.3e-52 208.4 158 71.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.6e-52 208.0 146 76.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 9.6e-52 208.0 146 76.7
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 9.6e-52 208.0 158 71.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.2e-51 207.6 146 76.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.2e-51 207.6 145 77.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-51 206.8 153 71.2
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.1e-51 206.8 159 71.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.1e-51 206.8 158 71.5
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.8e-51 206.5 158 72.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.8e-51 206.5 175 66.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.8e-51 206.5 157 72.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.8e-51 206.5 157 72.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 3.6e-51 206.1 148 73.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.1e-51 204.9 146 76.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.1e-50 204.5 146 75.3
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.4e-50 204.1 149 72.5
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.8e-50 203.8 158 70.9
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.4e-50 203.4 157 71.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.1e-50 203.0 148 73.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.1e-50 203.0 144 75.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.1e-50 203.0 144 75.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.1e-50 203.0 144 75.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.1e-50 203.0 144 75.7
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 4.0e-50 202.6 145 75.2
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.2e-50 202.2 145 75.2
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.2e-50 202.2 145 73.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.2e-50 202.2 144 75.7
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.2e-50 202.2 145 74.5
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.2e-50 202.2 145 74.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.2e-50 202.2 144 74.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-50 202.2 149 72.5
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 6.9e-50 201.8 157 70.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 6.9e-50 201.8 160 69.4
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 9.0e-50 201.4 145 75.2
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.0e-50 201.4 158 69.6
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-49 200.3 159 66.7
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.6e-49 199.9 159 69.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.6e-49 199.9 155 69.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.6e-49 199.9 157 70.1
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.4e-49 199.5 118 88.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 3.4e-49 199.5 143 74.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-49 199.5 158 69.0
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-49 199.5 158 69.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.4e-49 199.1 146 73.3
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 7.6e-49 198.4 144 74.3
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 7.6e-49 198.4 143 74.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 9.9e-49 198.0 162 66.7
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 9.9e-49 198.0 145 73.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.3e-48 197.6 155 68.4
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.2e-48 196.8 145 70.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.2e-48 196.8 146 71.2
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.2e-48 196.8 149 70.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.8e-48 196.1 146 69.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.8e-48 196.1 179 62.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.8e-48 196.1 161 65.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.9e-48 195.7 146 70.5
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.1e-47 194.5 146 69.9
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-47 194.5 144 70.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-47 194.5 145 69.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-47 194.1 144 70.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.9e-47 193.7 146 69.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.4e-47 193.4 145 71.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.4e-47 193.4 109 90.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.2e-47 193.0 146 71.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 3.2e-47 193.0 145 71.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-47 193.0 144 69.4
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.2e-47 193.0 174 64.4
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 4.2e-47 192.6 152 71.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 5.4e-47 192.2 146 69.2
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 9.3e-47 191.4 145 70.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-46 190.7 161 67.1
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.6e-46 190.7 128 77.3
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-46 190.3 156 66.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-46 190.3 161 67.1
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-46 190.3 161 67.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.1e-46 190.3 104 91.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-46 189.9 145 70.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.7e-46 189.9 145 70.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.7e-46 189.9 151 68.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.7e-46 189.9 145 70.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.7e-46 189.9 157 66.2
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 3.5e-46 189.5 145 69.7
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.5e-46 189.5 157 66.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.0e-46 188.7 145 69.7
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.0e-46 188.7 147 68.0
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.8e-46 188.3 145 69.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 7.8e-46 188.3 145 68.3
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.0e-45 188.0 145 69.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.0e-45 188.0 107 87.9
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.0e-45 188.0 170 61.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-45 187.6 182 61.0
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.3e-45 187.6 146 65.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.7e-45 187.2 145 69.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-45 187.2 145 69.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-45 187.2 158 63.3
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-45 186.8 145 69.0
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.9e-45 186.0 145 69.0
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.9e-45 186.0 145 69.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.1e-45 185.7 145 69.0
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.7e-45 184.9 145 68.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 8.7e-45 184.9 149 64.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.1e-44 184.5 104 87.5
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.1e-44 184.5 147 65.3
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.5e-44 184.1 146 69.2
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 7.3e-44 181.8 155 65.2
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-43 180.3 163 60.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.8e-43 179.1 145 66.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-43 179.1 137 68.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.2e-43 178.7 144 66.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 8.1e-43 178.3 100 88.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.1e-43 178.3 170 60.0
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.1e-42 177.9 105 83.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.4e-42 177.6 143 66.4
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.1e-42 176.4 98 89.8
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.5e-41 174.1 212 50.9
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-41 173.3 139 69.1
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.6e-41 173.3 103 84.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.6e-41 173.3 145 63.4
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.4e-41 172.9 104 83.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.4e-41 172.9 108 81.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.4e-41 172.9 150 61.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.6e-41 171.8 111 79.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.1e-39 167.9 150 61.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.4e-39 165.6 103 80.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-38 162.9 91 85.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 6.7e-37 158.7 107 71.0
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.3e-34 149.1 91 82.4
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 5.3e-34 149.1 81 88.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.9e-34 148.7 99 77.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.0e-34 148.3 117 70.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-33 147.5 146 58.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.5e-33 146.0 79 88.6
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 3.2e-31 139.8 108 63.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.2e-31 139.4 90 78.9
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-25 120.9 82 73.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-25 120.2 73 84.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.5e-25 119.4 103 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.8e-25 119.0 81 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.4e-23 114.4 124 50.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.7e-21 105.5 71 71.8
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-17 94.0 63 73.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-16 91.7 68 70.6
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 9.4e-15 85.1 45 86.7
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-14 83.6 48 87.5
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-14 83.6 48 87.5
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.4e-13 81.3 102 45.1
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-12 77.8 115 48.7
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 3.3e-12 76.6 116 40.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.1e-10 70.1 89 43.8


User provided reference genes

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