Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 0.0e+00 1501.5 743 100.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 7.2e-83 312.8 805 31.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.6e-82 310.5 777 31.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.1e-82 309.7 832 30.6
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.4e-80 303.9 852 30.3
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.7e-80 303.1 805 30.3
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.3e-79 302.0 844 29.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-79 300.4 823 31.0
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.4e-78 298.5 831 29.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 4.1e-78 297.0 788 31.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 9.2e-78 295.8 812 29.6
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.2e-77 295.4 803 29.9
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.0e-77 294.7 822 30.5
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.7e-77 294.3 800 28.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.0e-76 292.4 813 29.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.6e-76 289.3 850 29.5
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.3e-75 287.0 826 28.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 9.5e-75 285.8 833 28.7
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.6e-72 277.7 817 28.0
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.4e-72 276.9 841 29.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 7.5e-72 276.2 834 29.1
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.3e-71 275.4 831 29.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-71 274.6 783 28.9
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.8e-70 271.6 827 28.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.2e-69 268.9 846 27.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-68 265.4 555 33.2
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.7e-68 265.0 851 28.7
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.9e-68 263.8 841 27.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.6e-68 263.1 658 30.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.6e-68 262.7 842 27.7
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.9e-67 261.5 851 27.5
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.9e-67 261.5 916 26.4
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.5e-67 261.2 801 27.6
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.3e-67 260.8 813 28.0
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.6e-66 257.3 752 29.5
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 6.2e-66 256.5 811 27.5
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.1e-65 255.8 889 27.1
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.1e-65 255.8 836 28.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.8e-65 255.0 809 27.7
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.8e-65 255.0 841 26.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.1e-65 254.2 845 27.3
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.8e-65 253.1 545 31.4
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.2e-64 252.3 855 28.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.0e-64 251.5 840 28.2
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.6e-64 251.1 838 29.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.4e-64 250.8 838 27.9
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.4e-64 250.8 918 26.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.4e-64 250.8 828 27.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 4.4e-64 250.4 797 27.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.4e-64 250.4 834 27.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.3e-63 248.8 942 25.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.3e-63 248.8 835 27.1
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.7e-63 248.4 821 27.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.7e-63 247.3 825 27.3
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.9e-63 246.9 856 27.2
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 8.3e-63 246.1 815 27.1
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 8.3e-63 246.1 974 25.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.9e-62 245.0 811 27.6
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.4e-62 243.4 745 30.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 7.0e-62 243.0 850 27.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-61 242.3 828 27.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.2e-61 242.3 747 27.0
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.6e-61 241.9 834 26.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.1e-61 241.5 833 27.0
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.7e-61 241.1 819 26.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.6e-61 240.4 860 28.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.0e-61 240.0 822 26.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.0e-60 237.7 833 26.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 6.6e-60 236.5 871 28.6
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 8.6e-60 236.1 837 27.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.1e-59 235.7 828 26.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.5e-59 234.6 811 27.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 9.5e-59 232.6 801 27.7
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 9.5e-59 232.6 826 25.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.1e-58 231.5 817 27.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.8e-58 231.1 874 27.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.1e-58 229.6 743 25.7
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 8.1e-58 229.6 822 26.0
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-57 229.2 764 26.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.3e-57 228.0 1011 26.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.5e-56 225.3 805 27.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.9e-56 222.6 865 26.7
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.3e-55 222.2 828 27.7
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.3e-55 222.2 862 26.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.7e-55 221.9 813 26.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.2e-55 221.5 820 26.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.4e-54 218.8 723 26.7
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 9.2e-54 216.1 803 27.0
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.7e-53 214.5 826 24.8
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 7.8e-53 213.0 747 28.0
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.5e-51 208.8 838 26.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 7.3e-51 206.5 509 29.9
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.4e-49 202.2 800 26.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.9e-49 199.5 954 24.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 7.6e-48 196.4 781 25.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 2.7e-45 188.0 700 25.4
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.7e-44 185.3 734 24.7
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 8.7e-44 183.0 787 25.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.2e-40 172.6 715 26.6
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.4e-40 171.0 522 27.4
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.2e-39 168.3 710 26.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.9e-39 167.9 706 24.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-38 166.0 404 32.9
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.9e-38 165.2 431 30.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 4.2e-38 164.1 432 31.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 9.3e-38 162.9 144 46.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-37 162.5 517 27.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.6e-36 156.8 687 25.0
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-35 156.0 411 29.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.9e-35 155.2 422 29.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.3e-35 154.1 405 29.6
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.3e-35 153.3 719 25.6
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 9.6e-35 152.9 601 26.8
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-34 152.5 487 28.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.8e-34 150.6 839 23.6
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 6.2e-34 150.2 848 22.9
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.2e-34 150.2 568 26.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.1e-33 149.4 680 25.3
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.0e-33 147.5 465 29.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.0e-33 147.5 402 31.3
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.2e-32 146.0 405 29.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.2e-32 146.0 395 31.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.0e-32 145.2 410 29.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.4e-32 144.4 416 28.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.5e-32 144.1 421 31.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.5e-32 144.1 421 31.8
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.8e-32 143.7 407 29.5
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.7e-31 142.1 847 22.1
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.7e-31 142.1 462 27.7
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 3.2e-30 137.9 559 27.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-29 135.6 547 24.7
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.8e-28 132.1 405 28.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-28 132.1 708 24.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.3e-28 131.7 400 29.5
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.5e-27 129.0 437 28.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.5e-27 128.3 419 28.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.6e-27 127.1 140 39.3
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.6e-27 127.1 740 24.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 9.6e-27 126.3 642 26.3
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.3e-26 125.9 635 26.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 5.3e-25 120.6 654 24.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.5e-24 119.0 418 28.7
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.5e-24 117.5 579 26.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 8.4e-23 113.2 612 25.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.7e-21 108.2 95 47.4
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.6e-19 100.5 350 27.7
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.4e-16 91.3 287 27.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-15 89.0 675 22.4
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.9e-15 88.2 93 41.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.8e-15 87.8 137 37.2
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 9.3e-14 83.2 265 31.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.5e-13 81.3 308 23.7
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.9e-12 77.8 120 37.5
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 6.7e-12 77.0 123 35.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 9.7e-11 73.2 123 33.3
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.2e-10 70.1 76 43.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.0e-08 65.5 61 52.5
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 8.5e-07 60.1 51 51.0
MELO3C013440.2 Cucumis melo HOM05D001347 ORTHO05D001198 1.1e-06 59.7 90 35.6
Hund00237 Selenicereus undatus HOM05D001347 ORTHO05D001198 4.2e-06 57.8 87 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 5.5e-06 57.4 338 24.0
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-06 57.0 68 45.6
Dinv23482 Davidia involucrata HOM05D001347 ORTHO05D001198 7.2e-06 57.0 87 35.6
CAN.G1544.15 Capsicum annuum HOM05D001347 ORTHO05D001198 9.4e-06 56.6 87 34.5
Cc02_g17160 Coffea canephora HOM05D001347 ORTHO05D001198 9.4e-06 56.6 87 34.5


User provided reference genes

Program Settings