Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1751.9 846 100.0
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 859 66.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 851 65.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1176.0 845 66.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1175.6 853 66.5
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1172.1 879 64.8
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 846 65.0
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1156.4 852 64.2
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 846 64.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 852 65.0
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1145.2 851 64.2
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 848 65.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1140.2 850 63.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 847 64.3
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 851 64.0
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 846 64.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1132.1 841 64.1
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1130.9 848 63.6
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 845 63.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 876 62.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 848 64.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 850 62.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 844 63.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 844 63.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 846 63.8
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1123.6 844 63.2
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 852 63.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1121.7 852 62.6
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 852 62.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 848 63.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 849 63.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 851 62.4
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 852 62.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 846 61.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 853 61.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 851 62.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 848 62.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 809 65.1
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 861 61.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 850 61.9
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 848 62.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 850 62.2
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 824 64.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 854 61.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 848 62.1
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 849 61.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 852 61.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1092.0 844 61.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1090.5 850 62.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 849 62.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 812 64.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 844 60.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 856 60.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 849 61.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1084.3 847 61.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 854 61.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 841 62.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1082.0 844 60.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 868 60.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1078.2 845 61.4
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1077.4 869 59.8
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 970 55.6
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1076.2 854 61.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 1.2e-311 1073.2 849 60.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 851 61.6
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 6.9e-311 1070.5 844 61.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 2.5e-310 1068.5 853 61.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 2.5e-310 1068.5 848 60.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.4e-310 1068.1 848 60.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 840 61.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 5.7e-310 1067.4 866 58.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 9.7e-310 1066.6 851 60.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 6.3e-309 1063.9 861 61.1
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.6e-307 1059.3 851 59.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.6e-307 1059.3 848 59.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 7.7e-307 1057.0 853 60.3
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 1.0e-306 1056.6 851 60.6
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 4.2e-305 1051.2 868 59.2
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.5e-305 1050.8 788 63.7
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 847 59.4
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 3.6e-304 1048.1 856 59.8
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 8.0e-304 1047.0 812 60.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-303 1046.2 855 59.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.4e-303 1046.2 856 59.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 5.2e-303 1044.3 861 57.8
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 7.5e-302 1040.4 857 59.3
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.7e-301 1038.1 885 57.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 8.3e-301 1036.9 848 60.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.4e-300 1034.2 887 57.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.0e-299 1032.3 846 59.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 2.7e-299 1031.9 848 59.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.3e-297 1025.0 837 59.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 4.2e-297 1024.6 767 62.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 6.8e-295 1017.3 850 58.9
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.3e-293 1013.1 751 63.0
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.1e-288 995.7 846 58.0
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.6e-286 988.8 725 63.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.5e-283 978.4 909 54.8
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.3e-282 976.5 774 59.8
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-281 973.4 853 57.4
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 8.1e-280 967.2 775 59.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 8.9e-279 963.8 774 58.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.2e-278 963.4 790 57.7
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.0e-278 962.6 777 58.4
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.4e-278 961.4 875 54.5
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.9e-277 958.7 716 62.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.4e-276 956.4 757 61.3
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.9e-276 956.1 773 59.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-275 953.4 861 56.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 3.9e-274 948.3 771 58.9
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.5e-273 946.4 778 58.4
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 9.5e-273 943.7 776 58.2
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 3.6e-272 941.8 806 57.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 4.7e-264 914.8 731 59.0
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.1e-263 912.1 773 57.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.5e-259 898.7 859 52.5
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 6.4e-253 877.9 817 52.3
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-249 867.1 855 51.7
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 9.9e-246 854.0 851 49.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 3.9e-242 842.0 800 52.1
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 8.7e-242 840.9 642 62.0
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-236 822.4 769 52.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.5e-233 812.8 794 52.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 4.3e-233 812.0 793 50.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.4e-215 753.1 599 60.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.2e-204 716.1 625 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 9.4e-204 714.5 712 50.3
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.3e-199 698.7 772 47.5
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 5.2e-194 682.2 650 54.0
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.7e-192 677.2 468 67.9
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.2e-188 662.9 432 69.4
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.8e-175 620.5 874 40.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-172 610.9 429 65.5
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 8.9e-170 601.7 586 51.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.3e-168 597.8 525 55.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.1e-167 594.7 656 49.4
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-165 588.2 468 59.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 8.9e-162 575.1 428 63.3
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-146 525.0 574 50.0
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.2e-121 441.8 373 57.4
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 4.5e-121 439.9 315 64.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.2e-107 394.4 331 56.2
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.1e-106 389.0 778 33.5
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-104 384.8 443 47.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.2e-104 384.4 267 67.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 7.9e-94 349.4 406 45.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 5.7e-92 343.2 436 44.3
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 5.5e-87 326.6 393 45.8
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 7.0e-82 309.7 241 62.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 8.5e-80 302.8 481 36.2
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.3e-75 288.9 828 29.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.7e-60 236.9 202 56.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 3.2e-58 231.1 199 56.3
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-50 206.1 179 52.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.5e-49 201.1 136 66.2
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 2.5e-47 194.9 96 88.5
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 3.0e-40 171.4 192 46.9
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.3e-39 167.9 100 75.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 5.2e-37 160.6 199 44.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 8.1e-30 136.7 110 58.2
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.5e-23 115.9 85 63.5
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.2e-20 106.3 95 56.8
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 4.5e-20 104.4 83 59.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.7e-19 102.4 119 44.5
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.7e-17 95.1 69 63.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 4.6e-17 94.4 84 53.6
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.4e-13 82.0 38 86.8
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.9e-13 80.5 37 89.2
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.0e-12 79.0 45 75.6
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.4e-12 78.2 65 55.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-12 77.8 97 46.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 5.8e-12 77.4 96 46.9
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 7.6e-12 77.0 44 81.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 7.6e-12 77.0 70 47.1
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.2e-11 75.5 60 61.7
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 2.7e-09 68.6 67 55.2


User provided reference genes

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