Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.4e-28 127.5 58 100.0
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 1.7e-27 125.2 58 98.3
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 3.9e-24 114.0 58 87.9
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 1.1e-23 112.5 58 86.2
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 1.5e-23 112.1 58 86.2
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 2.5e-23 111.3 58 84.5
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 3.3e-23 110.9 58 82.8
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.3e-23 110.9 58 84.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 3.3e-23 110.9 58 84.5
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 3.3e-23 110.9 58 84.5
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 4.3e-23 110.5 58 84.5
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 4.3e-23 110.5 58 84.5
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 4.3e-23 110.5 58 82.8
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 4.3e-23 110.5 58 84.5
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 84.5
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 84.5
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 82.8
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 82.8
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 82.8
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 5.6e-23 110.2 58 84.5
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 7.3e-23 109.8 58 81.0
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 7.3e-23 109.8 58 84.5
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 9.5e-23 109.4 58 82.8
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 9.5e-23 109.4 58 84.5
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.2e-22 109.0 58 84.5
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 1.6e-22 108.6 58 82.8
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 1.6e-22 108.6 58 86.2
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 2.1e-22 108.2 57 84.2
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 2.1e-22 108.2 58 79.3
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 2.1e-22 108.2 58 81.0
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 2.1e-22 108.2 58 79.3
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 2.1e-22 108.2 58 82.8
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 2.1e-22 108.2 58 82.8
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 2.8e-22 107.8 58 77.6
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 2.8e-22 107.8 58 81.0
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 81.0
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 81.0
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 81.0
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 79.3
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 82.8
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.6e-22 107.5 58 79.3
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 4.7e-22 107.1 58 84.5
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 4.7e-22 107.1 58 82.8
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 4.7e-22 107.1 58 82.8
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 6.2e-22 106.7 58 79.3
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 6.2e-22 106.7 58 82.8
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 6.2e-22 106.7 58 81.0
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 6.2e-22 106.7 58 81.0
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 8.0e-22 106.3 58 81.0
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 79.3
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 79.3
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 79.3
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 79.3
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 81.0
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 1.0e-21 105.9 58 81.0
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 1.0e-21 105.9 57 80.7
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 1.4e-21 105.5 58 79.3
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 1.4e-21 105.5 58 77.6
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 1.8e-21 105.1 58 79.3
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 1.8e-21 105.1 58 82.8
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 2.3e-21 104.8 58 77.6
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 2.3e-21 104.8 58 81.0
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 4.0e-21 104.0 58 79.3
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 4.0e-21 104.0 58 79.3
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 5.2e-21 103.6 58 79.3
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 5.2e-21 103.6 58 81.0
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 5.2e-21 103.6 58 77.6
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 6.8e-21 103.2 58 75.9
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 6.8e-21 103.2 58 77.6
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 6.8e-21 103.2 58 75.9
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 6.8e-21 103.2 58 74.1
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 1.2e-20 102.4 58 79.3
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 1.5e-20 102.1 58 77.6
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 74.1
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 74.1
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 77.6
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 77.6
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 77.6
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 74.1
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 2.0e-20 101.7 58 77.6
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 2.6e-20 101.3 58 75.9
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.6e-20 101.3 58 75.9
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 2.6e-20 101.3 58 75.9
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 3.4e-20 100.9 58 74.1
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.4e-20 100.5 58 75.9
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 4.4e-20 100.5 58 75.9
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 4.4e-20 100.5 58 75.9
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 5.8e-20 100.1 58 75.9
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 5.8e-20 100.1 58 75.9
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 7.5e-20 99.8 58 72.4
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 9.8e-20 99.4 58 74.1
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 1.3e-19 99.0 57 75.4
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 1.3e-19 99.0 58 69.0
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.7e-19 98.6 58 72.4
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 1.7e-19 98.6 58 74.1
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 2.9e-19 97.8 58 72.4
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 3.7e-19 97.4 58 70.7
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 4.9e-19 97.1 57 73.7
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 6.4e-19 96.7 58 72.4
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 2.4e-18 94.7 58 69.0
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 5.4e-18 93.6 58 70.7
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 7.0e-18 93.2 58 69.0
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.2e-17 92.4 58 67.2
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.6e-17 92.0 58 67.2
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 2.0e-17 91.7 56 69.6
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 2.0e-17 91.7 58 69.0
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 7.8e-17 89.7 58 69.0
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 1.0e-16 89.4 58 67.2
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 1.0e-16 89.4 58 65.5
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 1.7e-16 88.6 58 63.8
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.7e-16 88.6 53 73.6
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 5.0e-16 87.0 57 66.7
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 2.5e-15 84.7 58 62.1
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 7.3e-15 83.2 65 60.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-13 77.4 36 88.9
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 9.2e-10 66.2 39 69.2
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 7.8e-09 63.2 35 74.3
AT1G18773 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 3.9e-08 60.8 36 69.4
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 9.5e-07 56.2 56 39.3


User provided reference genes

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