Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 3083.1 1578 100.0
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2115.5 1582 67.7
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2113.6 1582 68.8
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2035.0 1582 65.7
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1998.4 1608 64.2
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1994.2 1581 64.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1990.3 1585 64.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1989.9 1581 64.1
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1982.6 1585 64.5
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1978.4 1579 64.5
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1976.4 1580 64.5
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1969.9 1584 64.8
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1969.1 1581 64.2
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1966.8 1673 62.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1961.4 1584 63.4
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1960.3 1585 64.1
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1947.2 1581 63.3
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1942.5 1580 63.4
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 1942.5 1584 63.4
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1941.0 1581 63.2
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1938.7 1585 63.2
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 1938.7 1584 63.3
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1938.3 1576 63.6
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1937.9 1585 63.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1934.5 1582 63.3
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1934.1 1581 63.1
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1929.1 1581 62.9
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1926.4 1580 62.8
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1925.2 1585 62.8
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1922.9 1585 62.7
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1920.6 1581 62.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1917.1 1580 62.0
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1914.0 1580 62.7
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1911.3 1585 62.1
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 1905.2 1580 62.1
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1903.6 1580 62.5
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1903.3 1581 62.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1900.9 1579 62.4
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1899.8 1593 62.8
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1899.8 1582 62.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 1892.5 1584 62.3
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1890.9 1581 61.2
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1887.1 1582 61.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1886.3 1612 61.8
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 1881.3 1636 60.9
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1879.8 1576 60.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 1876.7 1684 59.5
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 1873.6 1484 65.1
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 1870.5 1595 60.8
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 1870.1 1576 61.3
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1865.1 1584 61.4
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1859.0 1587 61.2
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1856.6 1600 61.7
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1848.9 1580 60.9
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 1848.2 1766 56.9
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 1840.5 1645 58.4
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1839.7 1584 60.5
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 1839.7 1585 59.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1828.1 1581 60.2
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 1823.1 1586 59.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 1817.4 1586 59.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 1815.8 1582 59.7
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 1815.0 1586 59.3
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 1815.0 1584 59.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 1803.1 1586 59.0
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 1779.6 1582 59.3
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 1777.3 1587 58.5
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 1771.9 1619 57.8
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1764.6 1580 58.7
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1755.3 1407 63.7
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1750.7 1586 58.2
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1744.9 1586 58.1
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 1740.3 1587 58.0
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 1706.0 2013 48.6
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 1695.2 1586 56.4
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1636.7 1461 59.5
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1624.0 1430 59.8
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 1621.3 1328 61.8
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1611.7 1590 52.5
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1605.9 1582 52.5
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1601.3 1275 63.2
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1570.8 1581 51.8
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 1506.9 1200 63.8
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1496.9 1190 63.8
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1482.2 1153 64.3
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1477.6 1599 49.4
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1446.0 1272 57.9
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1310.0 1205 56.9
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1246.9 1124 58.4
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1231.5 1558 47.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1228.4 1598 43.6
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 8.2e-310 1067.8 843 64.5
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 4.6e-305 1052.0 931 57.6
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 6.1e-289 998.4 783 65.3
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.4e-271 939.5 814 59.2
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-263 913.7 1589 38.5
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.7e-241 839.3 786 55.2
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.4e-238 828.9 779 55.1
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-235 821.6 1589 35.7
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.0e-227 795.0 701 57.3
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.3e-219 768.1 936 47.2
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.4e-213 748.0 650 60.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.9e-204 715.7 1036 40.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.1e-202 711.8 1050 42.7
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.5e-202 710.7 1040 40.0
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 7.6e-199 699.1 702 55.1
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 3.3e-170 604.0 522 60.9
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-140 504.6 523 54.5
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.8e-135 486.5 488 54.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 9.9e-114 416.4 397 54.9
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 9.2e-112 409.8 377 57.6
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-89 335.9 302 60.3
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.6e-87 329.3 380 47.6
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.0e-86 326.6 210 74.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-83 316.6 335 51.3
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 2.0e-82 312.4 299 54.8
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 6.5e-81 307.4 228 70.6
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 6.5e-81 307.4 323 54.2
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.1e-79 302.4 278 56.1
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 3.0e-78 298.5 321 53.3
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.9e-69 269.2 309 48.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.5e-64 251.1 189 66.7
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 1.2e-55 223.4 176 68.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 2.2e-49 202.6 216 55.1
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 8.5e-49 200.7 304 43.1
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.4e-46 193.4 1692 22.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.3e-45 188.7 179 54.2
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 8.8e-38 164.1 217 43.8
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.7e-37 161.4 223 42.6
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.7e-37 161.4 223 42.6
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 7.5e-37 161.0 336 36.3
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 9.8e-37 160.6 332 34.0
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.2e-36 159.5 124 65.3
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.1e-35 157.1 121 65.3
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.6e-34 153.3 767 22.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 8.6e-33 147.5 148 56.1
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 3.6e-31 142.1 1006 23.5
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 8.0e-31 141.0 126 65.1
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 5.2e-30 138.3 159 47.8
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 3.7e-28 132.1 83 74.7
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-27 130.6 97 63.9
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.1e-27 128.6 395 29.1
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 4.7e-23 115.2 75 69.3
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.3e-22 112.8 105 51.4
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-20 106.7 98 58.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.4e-19 103.6 147 42.9
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.9e-16 93.2 255 31.0
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.1e-15 89.7 100 50.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.1e-15 89.7 113 47.8
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-15 88.6 68 64.7
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.0e-13 83.2 99 47.5
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-12 80.1 81 58.0
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 6.4e-12 78.2 106 42.5
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 8.3e-12 77.8 44 84.1
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 6.0e-10 71.6 94 41.5
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 1.0e-09 70.9 88 47.7
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 5.1e-09 68.6 94 40.4
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 6.6e-09 68.2 64 48.4
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 8.6e-09 67.8 70 52.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.3e-08 65.9 59 55.9
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.6e-08 65.1 46 67.4
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 5.6e-08 65.1 37 75.7
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.7e-07 62.0 43 62.8
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 6.2e-07 61.6 54 50.0
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 1.4e-06 60.5 52 55.8


User provided reference genes

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