Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 3.9e-309 1063.9 522 100.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 9.1e-266 919.8 508 86.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.3e-260 901.4 501 84.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.7e-259 897.9 501 84.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.0e-256 889.8 521 81.6
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.0e-256 887.5 516 81.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 8.5e-256 886.7 520 81.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 4.2e-255 884.4 498 83.7
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.2e-255 884.4 522 80.5
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 7.2e-255 883.6 513 81.3
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 7.2e-255 883.6 513 81.3
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 9.4e-255 883.2 520 80.0
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 9.4e-255 883.2 506 82.0
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.2e-254 882.9 515 81.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.6e-254 882.5 512 81.1
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.6e-254 881.3 498 82.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.1e-254 880.6 505 83.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.0e-253 879.8 515 80.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.8e-253 879.0 518 79.7
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 4.0e-253 877.9 526 79.7
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 5.2e-253 877.5 516 81.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 6.8e-253 877.1 512 80.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.8e-253 876.7 514 80.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.0e-252 875.5 518 81.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.6e-252 875.2 503 81.9
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 4.4e-252 874.4 528 79.2
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 5.7e-252 874.0 512 81.2
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.7e-252 874.0 514 80.2
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.7e-252 874.0 519 80.3
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 9.8e-252 873.2 515 80.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 3.7e-251 871.3 515 79.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-251 871.3 517 79.9
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.7e-251 871.3 520 79.2
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.8e-251 870.9 516 79.7
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 8.3e-251 870.2 514 81.1
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 8.3e-251 870.2 527 78.6
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.1e-250 869.8 516 79.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.1e-250 868.2 518 80.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.1e-250 867.8 498 81.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 5.4e-250 867.5 517 79.9
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 5.4e-250 867.5 517 79.7
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 5.4e-250 867.5 516 79.8
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.4e-250 867.5 519 79.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 5.4e-250 867.5 519 78.8
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 7.0e-250 867.1 500 81.2
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 7.0e-250 867.1 562 75.3
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 7.0e-250 867.1 508 80.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.1e-250 866.7 517 79.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.5e-249 864.8 514 80.9
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.5e-249 864.4 501 81.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.5e-249 864.4 527 78.6
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.0e-248 863.2 517 78.7
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.0e-248 863.2 498 81.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.0e-248 863.2 505 80.4
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.3e-248 862.8 498 81.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-248 862.8 513 79.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-248 862.4 517 78.7
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-248 862.4 519 79.4
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 3.8e-248 861.3 521 79.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.1e-247 859.8 523 78.0
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.5e-247 859.4 520 78.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.9e-247 859.0 501 80.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 3.3e-247 858.2 506 79.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 3.3e-247 858.2 506 79.6
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 7.2e-247 857.1 520 78.5
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.2e-247 857.1 508 79.1
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 9.5e-247 856.7 519 78.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-246 856.3 520 78.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-246 856.3 501 80.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.6e-246 855.9 529 78.1
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.1e-246 855.5 524 77.9
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.8e-246 855.1 522 78.5
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 8.0e-246 853.6 521 78.3
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 8.0e-246 853.6 521 78.3
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 8.0e-246 853.6 524 77.5
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 8.0e-246 853.6 506 79.1
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.0e-245 853.2 558 73.8
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-245 852.0 518 78.0
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 4.0e-245 851.3 501 80.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 5.2e-245 850.9 527 77.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 8.9e-245 850.1 521 77.9
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 8.9e-245 850.1 525 77.3
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.9e-245 850.1 517 79.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.9e-245 850.1 514 78.6
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-244 849.7 519 78.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.2e-244 849.7 514 78.4
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 3.4e-244 848.2 514 78.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.4e-244 848.2 519 78.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.4e-244 848.2 521 76.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 7.5e-244 847.0 521 77.5
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 7.5e-244 847.0 521 77.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 9.8e-244 846.7 491 81.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 9.8e-244 846.7 510 77.6
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 9.8e-244 846.7 524 77.5
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.8e-243 845.1 524 76.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.7e-243 844.7 521 78.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.4e-242 842.8 524 77.7
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.1e-242 841.6 498 79.5
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.6e-241 839.3 528 75.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.0e-241 839.0 542 74.5
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.0e-240 836.6 523 76.7
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 8.6e-240 833.6 498 78.9
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.3e-239 830.5 498 77.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.7e-238 827.8 508 76.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.0e-236 822.4 510 76.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.0e-236 822.4 510 76.5
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 8.3e-235 817.0 523 74.4
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.1e-234 816.6 524 74.6
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.1e-230 802.4 506 74.1
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.4e-229 799.7 498 75.9
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.3e-229 798.9 471 80.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.0e-229 798.1 523 73.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.8e-229 797.3 499 74.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 8.9e-229 797.0 535 72.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 9.8e-228 793.5 526 73.4
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.4e-226 788.9 535 70.7
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.2e-225 786.6 527 72.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.4e-220 768.5 558 68.1
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 8.6e-216 753.8 473 77.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 6.0e-209 731.1 500 69.8
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.4e-202 709.1 416 81.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.6e-200 701.0 501 69.9
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.2e-198 694.5 520 67.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.6e-196 689.1 397 82.1
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.4e-194 683.3 534 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 7.4e-191 671.0 496 66.7
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.9e-187 659.1 379 82.3
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 7.9e-185 651.0 518 65.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.2e-170 602.1 419 70.9
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.0e-168 597.4 346 81.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.5e-167 593.6 344 82.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 7.2e-154 548.1 491 54.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 3.6e-145 519.2 515 52.4
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.6e-143 513.1 355 70.7
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 5.5e-138 495.4 285 81.1
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 8.0e-137 491.5 266 84.6
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.4e-136 490.7 510 51.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 8.3e-134 481.5 275 83.6
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 8.6e-131 471.5 356 66.6
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.2e-126 456.8 502 49.2
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.5e-114 416.8 285 72.6
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.6e-84 317.8 189 76.2
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 9.0e-80 302.0 409 39.4
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.5e-61 240.7 359 41.5
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.6e-60 238.0 325 43.1
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.9e-38 164.1 93 80.6
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.9e-38 164.1 114 68.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.5e-26 125.2 79 69.6
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.7e-23 112.8 87 62.1
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 6.8e-19 99.8 92 52.2
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.5e-15 87.0 72 63.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.0e-14 85.9 69 62.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.8e-12 77.8 125 40.0
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.0e-11 75.9 49 65.3
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 4.1e-08 63.9 36 72.2


User provided reference genes

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