Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.8e-204 715.7 352 100.0
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 6.6e-103 378.3 303 65.0
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 1.3e-98 364.0 216 78.7
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 1.1e-97 360.9 222 77.9
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 3.2e-97 359.4 230 73.9
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 1.3e-95 354.0 235 73.2
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 1.3e-95 354.0 264 69.3
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 5.1e-95 352.1 271 65.3
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 8.7e-95 351.3 227 74.9
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 1.5e-94 350.5 265 65.7
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 1.9e-94 350.1 226 75.2
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 3.3e-94 349.4 265 67.2
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 4.3e-94 349.0 224 73.7
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 1.3e-93 347.4 249 72.3
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 1.3e-93 347.4 265 66.4
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 1.3e-93 347.4 255 67.8
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 2.1e-93 346.7 244 68.9
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 2.1e-93 346.7 218 75.7
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 3.7e-93 345.9 264 67.4
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 1.4e-92 344.0 257 67.3
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 1.8e-92 343.6 249 72.3
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 3.1e-92 342.8 226 73.9
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 4.0e-92 342.4 238 71.0
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 5.3e-92 342.0 219 74.4
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 5.3e-92 342.0 239 71.1
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 6.9e-92 341.7 240 70.4
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 6.9e-92 341.7 265 66.0
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.2e-91 340.9 220 75.0
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 1.2e-91 340.9 261 67.4
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 1.2e-91 340.9 251 68.1
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 1.5e-91 340.5 254 69.3
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 2.0e-91 340.1 255 67.8
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 3.4e-91 339.3 215 76.3
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 5.8e-91 338.6 253 67.2
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 7.6e-91 338.2 232 73.7
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 1.0e-90 337.8 251 66.1
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 1.0e-90 337.8 258 66.7
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 1.0e-90 337.8 209 79.4
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 1.0e-90 337.8 270 65.9
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 1.0e-90 337.8 249 71.1
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 1.3e-90 337.4 220 72.7
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 1.7e-90 337.0 225 71.1
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 1.7e-90 337.0 251 66.1
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.7e-90 337.0 253 66.8
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 2.9e-90 336.3 257 67.7
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 8.4e-90 334.7 270 65.6
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 1.1e-89 334.3 225 71.1
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 1.1e-89 334.3 258 65.9
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 1.9e-89 333.6 226 70.4
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.9e-89 333.6 213 75.6
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 3.2e-89 332.8 216 75.0
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 3.2e-89 332.8 210 78.1
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 3.2e-89 332.8 253 66.8
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 5.5e-89 332.0 251 65.7
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 7.1e-89 331.6 221 72.4
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.2e-88 330.9 216 75.9
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 2.7e-88 329.7 226 69.0
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 3.5e-88 329.3 251 65.7
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 7.9e-88 328.2 209 75.6
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 1.0e-87 327.8 273 62.6
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 1.0e-87 327.8 251 65.3
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 1.8e-87 327.0 254 65.0
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 3.0e-87 326.2 226 70.4
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 3.9e-87 325.9 209 76.6
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 6.7e-87 325.1 271 63.5
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 8.7e-87 324.7 226 70.8
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 1.5e-86 323.9 221 72.9
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 1.9e-86 323.6 224 71.9
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 3.3e-86 322.8 218 75.2
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 3.3e-86 322.8 230 67.0
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 4.3e-86 322.4 266 64.7
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 4.3e-86 322.4 294 59.2
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 5.7e-86 322.0 225 68.4
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 7.4e-86 321.6 206 73.3
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 1.3e-85 320.9 220 71.4
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 2.1e-85 320.1 212 73.6
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 3.7e-85 319.3 213 74.2
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 1.2e-83 314.3 227 69.6
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 5.9e-83 312.0 205 74.6
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 1.7e-82 310.5 213 73.2
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 2.9e-82 309.7 215 72.6
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 2.9e-82 309.7 223 69.5
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 7.9e-80 301.6 233 67.0
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 1.8e-79 300.4 214 67.8
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 1.9e-78 297.0 228 67.1
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 2.5e-78 296.6 204 71.1
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 3.3e-78 296.2 225 66.7
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 2.2e-74 283.5 209 65.6
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 5.5e-73 278.9 205 66.8
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 7.2e-73 278.5 206 68.4
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 7.9e-72 275.0 210 66.2
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 5.1e-71 272.3 216 62.5
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 1.1e-70 271.2 232 64.2
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 2.8e-69 266.5 186 72.6
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 8.2e-69 265.0 155 85.2
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 1.5e-67 260.8 206 61.2
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 1.4e-65 254.2 165 75.2
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 2.7e-64 250.0 253 53.8
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 3.6e-64 249.6 200 66.0
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 3.1e-60 236.5 255 49.4
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 9.1e-60 235.0 217 53.5
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 7.7e-59 231.9 256 54.3
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.7e-56 223.4 211 61.1
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 5.9e-51 205.7 230 51.3
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 2.9e-50 203.4 155 68.4
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 8.0e-48 195.3 132 77.3
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 2.6e-46 190.3 140 70.0
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 9.5e-41 171.8 193 46.6
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 1.6e-40 171.0 105 82.9
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 8.0e-40 168.7 180 46.7
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 4.4e-38 162.9 220 45.5
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 7.5e-38 162.2 190 42.6
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 1.0e-34 151.8 195 42.6
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 1.9e-33 147.5 129 54.3
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 1.9e-33 147.5 121 62.0
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 9.2e-28 128.6 97 59.8
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 2.3e-23 114.0 201 36.3
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 8.9e-23 112.1 188 42.0
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 4.9e-21 106.3 79 62.0
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 4.0e-15 86.7 76 65.8
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 5.8e-14 82.8 60 63.3
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.1e-09 68.6 50 66.0
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 1.1e-09 68.6 43 72.1
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 8.1e-08 62.4 190 27.9
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.1e-07 62.0 98 31.6
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 1.4e-07 61.6 184 31.5
Medtr2g103600 Medicago truncatula HOM05D000659 ORTHO05D000505 1.8e-07 61.2 152 32.2
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 6.8e-07 59.3 152 30.9
Ca_10788_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000505 1.5e-06 58.2 152 30.9
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 1.5e-06 58.2 150 32.0
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 1.5e-06 58.2 152 29.6
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 1.5e-06 58.2 87 34.5
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 2.0e-06 57.8 142 28.2
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 2.0e-06 57.8 173 28.3
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 2.0e-06 57.8 173 28.3
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 2.0e-06 57.8 173 27.7
BraA10t44950Z Brassica rapa HOM05D000659 ORTHO05D000505 2.6e-06 57.4 152 32.2
Psat5g301800 Pisum sativum HOM05D000659 ORTHO05D000505 2.6e-06 57.4 152 30.9
A10p29020 Brassica napus HOM05D000659 ORTHO05D000505 4.4e-06 56.6 152 31.6
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 4.4e-06 56.6 145 29.0
BcaC06g32457 Brassica carinata HOM05D000659 ORTHO05D000505 5.8e-06 56.2 152 30.9
C09p69380 Brassica napus HOM05D000659 ORTHO05D000505 5.8e-06 56.2 152 31.6
BolC9t59682H Brassica oleracea HOM05D000659 ORTHO05D000505 5.8e-06 56.2 152 31.6
FAN06G1231 Fragaria x ananassa HOM05D000659 ORTHO05D000505 5.8e-06 56.2 161 26.7
Os08g0546700 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 5.8e-06 56.2 99 33.3
LjContig00238g0018309 Lotus japonicus HOM05D000659 ORTHO05D000505 7.6e-06 55.8 148 29.7
PGR042G1240 Punica granatum HOM05D000659 ORTHO05D000505 7.6e-06 55.8 148 29.7
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 7.6e-06 55.8 146 28.8
Cpa.g.sc107.24 Carica papaya HOM05D000659 ORTHO05D000505 9.9e-06 55.5 146 28.1
Ca_01062_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000608 9.9e-06 55.5 152 30.3
FvH4_7g29110 Fragaria vesca HOM05D000659 ORTHO05D000505 9.9e-06 55.5 103 34.0
FAN06G2618 Fragaria x ananassa HOM05D000659 ORTHO05D000505 9.9e-06 55.5 103 34.0
Lsat_1_v5_gn_9_54280 Lactuca sativa HOM05D000659 ORTHO05D000505 9.9e-06 55.5 87 37.9
Lj3g0014536 Lotus japonicus HOM05D000659 ORTHO05D000505 9.9e-06 55.5 152 29.6


User provided reference genes

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