Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 2957.9 1497 100.0
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1885.5 1467 65.4
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1808.1 1489 62.9
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1758.4 1476 61.9
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1754.6 1476 61.1
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1745.3 1482 61.7
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1723.8 1476 60.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1689.5 1479 59.2
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1681.8 1478 59.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1681.0 1479 59.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1678.3 1479 58.8
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1677.9 1478 59.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1677.9 1478 58.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1676.0 1507 58.5
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1674.8 1482 58.8
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1672.1 1477 59.0
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1670.2 1480 59.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1661.7 1470 59.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1660.2 1476 58.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1660.2 1632 54.7
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1658.3 1478 58.7
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1657.9 1480 59.2
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1656.3 1476 59.4
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1652.9 1472 58.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1649.4 1480 58.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1647.9 1478 57.7
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1644.0 1480 58.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1642.5 1478 57.8
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1640.9 1478 58.1
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1638.6 1479 57.8
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1638.6 1478 57.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1637.1 1472 58.5
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1636.7 1479 56.5
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1632.8 1476 57.2
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1632.1 1483 57.5
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1631.3 1478 57.2
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1630.2 1479 57.0
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 1463 57.1
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1627.5 1476 57.1
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1623.2 1481 57.3
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1622.4 1482 57.4
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1614.4 1460 57.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1613.6 1461 56.7
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1612.4 1484 57.6
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1612.0 1479 57.0
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1608.6 1478 56.9
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1608.6 1487 56.8
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1597.4 1484 56.5
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1597.4 1478 56.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1595.1 1481 56.9
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1595.1 1427 58.2
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1584.7 1530 55.3
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1560.8 1466 55.9
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1555.0 1478 55.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1554.3 1246 64.8
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1553.5 1586 52.7
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1546.6 1492 54.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1545.8 1375 59.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1526.5 1481 54.4
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1524.2 1469 55.0
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1509.2 1345 58.7
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1501.9 1480 54.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1499.6 1449 54.2
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1497.6 1475 54.4
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1497.3 1464 54.1
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1496.1 1459 54.3
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1493.0 1452 54.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1491.5 1457 54.1
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1489.6 1456 54.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1486.5 1456 53.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1483.8 1542 52.7
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1481.1 1452 53.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1480.3 1456 53.6
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1478.8 1453 54.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1474.9 1457 53.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1474.1 1472 53.8
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1471.8 1488 52.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1466.8 1481 52.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1442.2 1595 50.2
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1429.8 1542 51.6
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1419.8 1439 53.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1417.9 1474 51.6
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1413.7 1488 51.1
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1408.3 1477 51.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1407.5 1138 62.9
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1398.6 1474 50.5
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1387.9 1381 52.6
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1382.1 1481 49.9
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1381.3 1491 49.8
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1380.9 1481 49.8
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1361.3 1472 49.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1359.4 1464 50.3
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1356.3 1469 49.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1354.3 1477 51.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1321.6 1484 50.7
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1321.6 1484 50.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1318.1 1470 50.7
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1280.4 1419 48.8
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1254.2 1467 46.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1142.5 954 61.6
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.0e-298 1030.8 1557 39.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.6e-294 1015.4 1412 41.5
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 9.8e-289 997.7 1585 39.9
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.8e-283 979.5 1581 39.1
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 4.8e-259 899.0 947 51.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 9.0e-234 815.1 1391 36.9
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 4.3e-228 796.2 905 49.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.8e-224 783.1 1478 36.7
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 4.4e-220 769.6 600 64.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.0e-218 762.3 630 63.2
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 2.4e-210 737.3 1480 34.7
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.9e-208 730.3 639 59.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.8e-195 687.2 580 61.4
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.1e-194 683.7 1679 30.3
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.5e-177 627.1 495 63.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.9e-171 607.4 486 63.8
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.9e-163 580.9 671 49.2
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.0e-160 572.4 582 54.0
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.9e-154 551.6 1170 33.4
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 2.4e-146 524.6 544 52.8
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-140 503.8 565 49.4
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 6.7e-136 490.0 552 49.6
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 4.8e-134 483.8 576 46.7
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.7e-126 457.6 472 51.9
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 6.7e-96 357.1 405 47.4
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 9.8e-87 326.6 273 61.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.6e-60 239.6 187 66.3
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-58 233.0 430 36.7
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-53 216.9 379 36.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.4e-47 195.3 348 38.2
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 2.7e-44 185.7 225 45.8
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.9e-43 181.8 229 42.8
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.2e-38 166.0 135 58.5
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 8.4e-38 164.1 170 49.4
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-29 136.7 161 45.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 7.1e-29 134.4 120 55.8
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-28 132.9 160 45.0
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 6.0e-28 131.3 1024 21.7
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.3e-27 129.4 379 23.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.1e-27 128.3 105 59.0
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-25 122.9 165 40.6
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 3.1e-24 119.0 81 60.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 7.6e-23 114.4 121 47.1
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 4.9e-22 111.7 137 50.4
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.2e-21 109.0 139 41.0
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 5.5e-21 108.2 83 68.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 7.1e-21 107.8 93 57.0
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.7e-20 105.9 124 47.6
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 3.8e-14 85.5 370 26.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.3e-11 77.0 91 49.5
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.3e-11 77.0 225 29.8
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-11 76.6 52 65.4
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 3.3e-10 72.4 146 34.9
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 9.7e-10 70.9 67 53.7
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 3.1e-08 65.9 146 33.6
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.3e-06 60.5 97 41.2
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.3e-06 60.5 148 29.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 5.0e-06 58.5 71 39.4


User provided reference genes

Program Settings