Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 0.0e+00 1315.8 676 100.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.0e-265 919.1 669 71.3
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.8e-258 896.0 659 70.1
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.1e-250 870.2 658 67.6
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.3e-250 867.8 661 68.1
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.6e-249 865.5 666 67.6
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 1.7e-248 862.8 657 68.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-247 860.1 658 67.0
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.9e-247 859.4 663 66.7
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 2.5e-247 859.0 655 67.3
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 3.2e-247 858.6 660 67.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.2e-247 857.4 663 67.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.6e-246 855.1 676 65.5
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.9e-245 851.7 660 65.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 5.1e-245 851.3 658 66.4
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 8.8e-245 850.5 659 65.7
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.1e-244 850.1 657 66.8
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.5e-244 849.7 661 66.1
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.6e-244 849.0 663 67.0
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 3.3e-244 848.6 672 64.3
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.4e-244 848.2 664 64.9
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 4.4e-244 848.2 661 66.0
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.3e-243 846.7 659 65.4
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.3e-243 846.7 659 66.3
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.2e-243 844.0 664 65.2
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.3e-242 841.3 662 64.8
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 9.1e-242 840.5 664 64.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 7.7e-241 837.4 664 64.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.7e-240 836.3 694 63.4
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.9e-240 835.5 663 65.2
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.4e-239 833.2 662 64.5
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.9e-239 832.8 663 64.9
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 2.5e-239 832.4 662 64.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 5.5e-239 831.2 665 64.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 5.5e-239 831.2 664 64.0
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.5e-239 831.2 663 65.5
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.7e-238 828.9 663 64.6
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.0e-237 827.0 663 64.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 3.0e-237 825.5 660 63.5
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 6.7e-237 824.3 657 64.2
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.3e-236 822.0 665 63.8
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 3.3e-236 822.0 665 63.8
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.3e-236 822.0 665 63.6
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 4.4e-236 821.6 660 64.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.7e-235 819.7 657 64.7
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.2e-235 819.3 662 63.6
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 2.2e-235 819.3 666 62.6
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 4.8e-235 818.1 667 62.8
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.4e-234 816.6 657 64.2
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 4.1e-234 815.1 664 63.4
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.6e-233 813.1 663 63.3
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 5.9e-233 811.2 670 62.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 5.9e-233 811.2 658 63.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.7e-232 809.7 660 63.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.8e-232 808.5 673 63.0
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 5.0e-232 808.1 665 63.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 5.0e-232 808.1 664 63.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 9.4e-231 803.9 662 63.0
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.1e-230 802.7 664 63.0
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.0e-229 800.4 660 62.9
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.0e-229 800.4 653 63.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 2.3e-229 799.3 664 63.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 6.8e-229 797.7 657 64.1
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 8.8e-229 797.3 665 63.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.7e-227 792.0 648 62.8
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 9.1e-226 787.3 702 60.5
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 7.7e-225 784.3 702 60.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.0e-224 783.9 670 61.0
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.9e-224 782.3 689 60.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 6.5e-224 781.2 652 62.4
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 6.1e-222 774.6 614 65.1
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.1e-222 774.6 659 61.2
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.4e-220 768.8 663 60.5
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 5.7e-220 768.1 592 67.2
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.8e-219 765.8 663 61.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 5.9e-217 758.1 687 58.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.9e-216 755.7 669 59.2
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 8.6e-216 754.2 654 59.9
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 7.2e-215 751.1 743 55.5
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.3e-211 740.3 619 62.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.8e-211 739.2 702 58.0
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 6.3e-211 738.0 619 63.0
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 7.0e-210 734.6 596 64.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.9e-207 726.5 660 59.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 7.3e-207 724.5 603 62.9
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.6e-206 723.4 657 59.5
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.8e-206 722.6 661 58.7
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.6e-201 706.8 863 48.4
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.6e-190 670.2 565 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.6e-190 669.1 664 54.7
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.0e-188 663.3 667 54.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.3e-174 617.5 849 44.9
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 3.6e-174 615.9 582 57.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.4e-171 605.1 486 65.4
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.9e-170 603.6 521 60.3
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.8e-166 589.0 608 53.9
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 4.5e-156 555.8 481 61.1
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.9e-155 553.1 438 65.3
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 5.3e-149 532.3 496 58.5
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.6e-121 439.9 465 51.4
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.6e-119 433.7 421 54.6
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.1e-117 426.8 346 63.9
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.2e-76 292.0 435 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.6e-76 290.0 411 42.8
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 3.6e-73 280.4 239 57.7
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.2e-65 255.4 202 65.8
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.2e-65 255.4 196 64.8
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.1e-65 254.6 169 72.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.7e-65 253.4 404 40.8
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-60 238.8 163 71.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 7.9e-52 209.5 284 46.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.5e-50 204.5 250 50.0
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 9.3e-45 186.0 147 63.3
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.8e-41 174.5 170 58.8
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.6e-39 167.9 140 61.4
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-38 164.1 406 31.3
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.1e-32 146.0 111 67.6
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-30 139.0 87 77.0
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 8.5e-30 136.3 98 66.3
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.2e-29 133.3 117 59.0
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.2e-28 132.5 142 52.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 4.6e-28 130.6 93 67.7
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.8e-27 128.6 94 63.8
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.8e-27 128.6 150 46.7
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 3.3e-26 124.4 243 37.4
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 9.7e-26 122.9 79 72.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.2e-23 115.9 167 40.1
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.6e-23 114.8 90 60.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 5.9e-23 113.6 83 67.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 5.9e-23 113.6 468 27.8
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.6e-18 98.2 78 66.7
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.4e-18 97.4 73 69.9
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 9.7e-18 96.3 84 61.9
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 2.2e-17 95.1 90 56.7
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.2e-15 89.4 65 64.6
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 4.5e-15 87.4 67 62.7
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 8.5e-14 83.2 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 8.5e-14 83.2 50 76.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 8.5e-14 83.2 61 63.9
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-13 80.5 74 55.4
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 6.1e-12 77.0 50 72.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.3e-09 67.0 65 47.7
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.6e-07 61.6 76 48.7


User provided reference genes

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