Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 0.0e+00 1086.6 533 100.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.0e-220 769.2 516 74.4
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.3e-215 751.9 517 72.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-213 746.5 515 73.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.2e-211 739.2 510 71.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.4e-210 733.8 506 72.5
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 4.7e-209 731.5 528 70.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.0e-208 730.3 519 71.1
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.4e-208 729.9 512 71.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.5e-207 726.5 512 71.1
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 7.5e-207 724.2 518 70.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 4.8e-206 721.5 510 71.8
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 6.3e-206 721.1 514 71.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 8.3e-206 720.7 509 70.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.1e-205 720.3 519 70.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-205 719.9 510 71.6
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.4e-205 719.2 520 69.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-205 719.2 510 71.6
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 7.0e-205 717.6 528 69.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.7e-204 715.7 520 70.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.0e-203 713.8 519 70.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.3e-203 713.4 521 69.9
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.9e-203 712.2 512 69.7
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 8.6e-203 710.7 510 70.6
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-202 710.3 510 70.8
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.1e-202 710.3 513 69.8
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.1e-202 710.3 508 70.9
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.1e-202 710.3 509 70.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-202 708.4 509 70.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 5.5e-202 708.0 511 70.1
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 9.5e-202 707.2 518 69.9
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.5e-202 707.2 512 69.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 9.5e-202 707.2 511 70.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 8.0e-201 704.1 513 69.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 8.0e-201 704.1 535 67.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.0e-201 704.1 531 67.4
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.8e-200 703.0 515 69.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 4.0e-200 701.8 539 67.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 4.0e-200 701.8 517 69.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.9e-200 700.7 519 69.0
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.0e-199 699.5 523 68.3
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-198 696.8 514 69.6
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.3e-198 696.8 515 68.7
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.2e-198 696.0 524 68.1
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.2e-198 696.0 506 68.6
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.1e-197 693.7 516 69.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.4e-197 693.3 524 67.9
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.4e-197 692.6 510 68.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.4e-197 691.4 524 67.7
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 7.0e-197 691.0 516 68.4
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.6e-196 689.9 515 68.9
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.7e-196 689.1 511 67.7
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.5e-196 688.3 511 69.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 7.8e-196 687.6 510 68.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-194 683.3 510 68.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.3e-194 681.0 510 67.6
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 9.5e-194 680.6 511 68.1
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.1e-193 679.5 519 67.1
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.1e-193 677.9 512 66.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 6.1e-193 677.9 507 67.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.0e-193 677.6 510 68.4
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 8.0e-193 677.6 515 68.2
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 8.0e-193 677.6 515 67.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 5.2e-192 674.9 514 68.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-191 673.7 514 66.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.2e-191 673.7 540 64.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.2e-191 673.7 523 65.2
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.7e-190 668.7 516 65.9
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.4e-189 666.8 516 65.7
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.0e-189 664.5 511 65.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.5e-186 656.8 590 59.8
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.9e-186 656.4 509 65.8
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.3e-186 655.2 510 66.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 5.6e-186 654.8 515 65.6
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.6e-186 654.8 515 66.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.8e-185 652.5 522 61.7
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.2e-185 651.4 541 64.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 7.5e-183 644.4 524 64.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.9e-182 642.5 505 65.5
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.1e-181 640.6 509 64.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-181 639.8 509 64.8
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-181 639.8 509 64.8
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 7.8e-180 634.4 470 69.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 7.3e-178 627.9 511 64.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-177 627.1 531 62.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 6.2e-177 624.8 547 61.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.4e-176 623.6 468 69.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 8.3e-174 614.4 515 62.1
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.1e-173 614.0 506 62.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.1e-173 612.1 511 62.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 4.1e-173 612.1 464 68.8
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.1e-173 611.3 512 60.5
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.7e-171 606.7 529 62.2
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.7e-171 606.7 526 60.3
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.2e-168 595.1 449 69.0
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 4.4e-167 592.0 476 64.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 7.6e-167 591.3 476 64.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.9e-167 590.9 518 59.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-163 580.5 518 59.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 6.6e-163 578.2 515 61.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 8.7e-163 577.8 520 58.5
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.2e-159 567.4 514 56.8
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.3e-158 563.9 470 63.2
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.3e-158 563.9 514 57.4
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.6e-156 557.0 508 57.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.1e-156 556.6 469 62.9
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.6e-153 547.0 509 55.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.4e-151 539.3 519 54.3
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.7e-150 537.0 420 67.1
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.2e-149 532.7 391 70.8
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.2e-149 532.3 390 71.5
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 9.3e-149 531.2 530 54.7
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.6e-148 530.4 391 71.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 8.7e-147 524.6 511 53.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.9e-142 508.8 309 79.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.4e-141 507.3 479 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 7.1e-141 505.0 529 51.0
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.1e-140 503.4 437 60.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.3e-131 474.2 394 65.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.3e-122 443.0 262 79.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.3e-121 438.7 543 45.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 6.9e-120 435.3 390 60.3
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 8.5e-118 428.3 395 60.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 5.2e-107 392.5 374 59.4
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.2e-105 385.2 198 96.5
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.0e-103 380.6 514 46.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.1e-96 356.3 360 56.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.2e-93 346.3 403 52.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.0e-83 313.5 353 53.5
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.0e-82 310.8 317 55.5
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 6.3e-81 305.8 234 67.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.0e-71 274.2 397 38.3
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.0e-70 269.6 219 62.1
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-66 257.3 185 65.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-61 241.1 131 82.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.9e-61 241.1 306 41.5
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.5e-61 240.7 115 97.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.6e-54 216.1 114 84.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.8e-52 210.7 330 38.2
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.7e-52 209.9 114 80.7
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.6e-50 204.1 113 80.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.7e-49 201.4 243 51.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-34 151.0 111 61.3
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.4e-32 145.2 137 54.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.7e-30 136.0 366 30.1
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-24 118.2 68 79.4
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.8e-20 103.6 128 55.5
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-18 98.2 468 25.4
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 2.9e-17 94.4 61 77.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.3e-12 76.6 60 63.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.3e-12 76.6 107 44.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.3e-12 76.6 45 77.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.9e-09 67.8 48 66.7
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-09 67.4 41 65.9
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.2e-08 63.2 58 58.6
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 9.4e-08 62.8 38 76.3


User provided reference genes

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