Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.7e-112 408.7 204 100.0
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.2e-105 383.6 198 96.5
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.8e-53 211.8 199 59.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.5e-50 201.4 198 60.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-48 196.8 193 58.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.1e-48 196.4 194 57.7
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 7.9e-48 194.5 194 57.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.8e-47 193.4 194 57.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.9e-47 192.2 202 54.5
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 5.1e-47 191.8 193 55.4
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.7e-47 191.0 194 56.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.7e-47 191.0 202 54.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.1e-46 190.7 200 53.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.9e-46 189.9 193 55.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.6e-45 186.8 197 51.3
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.8e-45 186.0 203 52.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.7e-45 185.7 201 53.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.4e-44 183.0 195 55.4
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.5e-43 180.3 195 53.8
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 4.5e-43 178.7 193 54.9
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.5e-43 178.7 193 54.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 7.6e-43 177.9 199 52.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 7.6e-43 177.9 196 53.6
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.6e-43 177.9 202 52.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.0e-42 177.6 194 53.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-42 176.4 193 54.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 3.8e-42 175.6 202 52.0
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.5e-42 174.9 193 54.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-41 174.1 193 53.9
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.1e-41 174.1 200 51.0
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-41 173.7 196 50.5
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-41 172.9 193 53.9
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 5.5e-41 171.8 192 51.6
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.2e-41 171.4 193 53.4
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 9.3e-41 171.0 192 52.6
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.1e-40 169.9 202 50.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.6e-40 169.1 196 50.0
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 7.9e-40 167.9 193 51.8
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 7.9e-40 167.9 197 50.8
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.0e-39 167.5 200 50.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.0e-39 167.5 194 52.1
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.3e-39 167.2 198 50.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.3e-39 167.2 198 50.0
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.3e-39 166.4 194 52.1
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.3e-39 166.4 198 51.0
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-39 166.4 199 51.8
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.0e-39 166.0 191 51.3
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.0e-39 166.0 194 51.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.9e-39 165.6 199 50.8
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 5.1e-39 165.2 193 51.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.1e-39 165.2 193 51.8
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.1e-39 165.2 195 50.8
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 8.7e-39 164.5 194 50.5
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.1e-38 164.1 194 53.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.5e-38 163.7 195 48.2
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.5e-38 162.9 198 49.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.5e-38 162.9 202 51.0
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 3.3e-38 162.5 195 49.2
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 4.3e-38 162.2 204 48.5
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 5.7e-38 161.8 198 50.5
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 5.7e-38 161.8 195 48.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.7e-38 161.8 194 49.5
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 7.4e-38 161.4 194 51.0
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 7.4e-38 161.4 193 49.2
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 9.7e-38 161.0 193 50.8
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 9.7e-38 161.0 195 48.7
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.6e-37 160.2 194 50.5
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.7e-37 159.1 194 47.9
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 8.2e-37 157.9 197 49.7
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.9e-36 154.8 192 48.4
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 6.9e-36 154.8 198 48.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 6.9e-36 154.8 202 48.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.2e-35 154.1 193 50.8
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.5e-35 153.7 193 50.8
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.5e-35 153.7 199 46.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.0e-35 153.3 198 49.0
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.0e-35 153.3 194 49.5
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.0e-35 153.3 194 47.4
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 2.6e-35 152.9 198 48.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.6e-35 152.9 193 49.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 3.4e-35 152.5 198 48.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.5e-35 152.1 198 47.0
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 7.7e-35 151.4 199 45.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.7e-35 151.4 192 49.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 6.5e-34 148.3 199 47.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 6.5e-34 148.3 194 45.9
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.1e-33 147.5 200 47.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.2e-33 145.6 197 43.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 5.5e-33 145.2 266 38.7
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 9.4e-33 144.4 192 47.4
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.6e-32 142.1 193 47.2
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.1e-32 141.7 195 44.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.8e-31 140.2 197 46.7
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.0e-30 136.7 192 45.8
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.6e-30 136.3 188 46.3
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 4.3e-30 135.6 197 45.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 5.7e-30 135.2 192 45.3
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 5.7e-30 135.2 192 45.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 7.4e-30 134.8 197 43.7
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.3e-29 134.0 190 46.8
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.8e-29 132.9 198 46.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.1e-28 129.4 198 43.9
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.0e-27 126.7 198 44.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.6e-27 126.3 198 43.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.3e-26 124.0 205 42.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.7e-26 123.6 192 42.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.8e-26 122.5 214 40.7
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.2e-24 117.5 195 41.0
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.0e-23 112.8 192 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 5.2e-23 112.1 195 40.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.7e-21 105.9 153 46.4
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.1e-20 102.8 195 38.5
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.1e-20 102.8 197 38.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 7.0e-20 101.7 151 43.7
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 3.5e-19 99.4 180 39.4
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.2e-18 96.7 151 45.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.2e-17 92.4 155 42.6
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.6e-16 89.4 159 42.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 6.1e-16 88.6 159 42.1
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 6.7e-15 85.1 156 41.7
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 6.7e-15 85.1 156 41.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 8.8e-15 84.7 152 42.8
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.2e-14 84.3 202 33.7
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.7e-14 82.0 187 35.8
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.7e-13 79.3 152 40.1
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.8e-13 79.0 108 45.4
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.4e-12 76.6 74 62.2
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.1e-12 74.7 107 43.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-11 73.9 187 34.2
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.2e-09 65.1 48 64.6
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 5.2e-07 58.9 228 29.4


User provided reference genes

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