Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.9e-96 355.1 168 100.0
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.8e-61 239.6 115 97.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.4e-44 181.0 129 69.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.7e-43 179.9 108 77.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-43 179.5 128 68.8
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-43 179.5 128 68.8
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-43 179.5 128 68.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.8e-43 179.1 100 81.0
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 3.7e-43 178.7 100 82.0
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 4.8e-43 178.3 112 75.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.8e-43 178.3 129 68.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 8.2e-43 177.6 129 68.2
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.2e-43 177.6 103 77.7
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.1e-42 177.2 107 75.7
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.1e-42 177.2 100 81.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-42 177.2 100 81.0
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-42 177.2 100 81.0
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.4e-42 176.0 108 75.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.4e-42 176.0 100 80.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.4e-42 176.0 100 80.0
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.1e-42 175.6 129 67.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.1e-42 175.6 100 79.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.1e-42 175.6 109 76.1
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 4.1e-42 175.3 100 80.0
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.1e-42 175.3 100 80.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.1e-42 175.3 100 80.0
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.3e-42 174.9 100 79.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.3e-42 174.9 103 76.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 7.0e-42 174.5 100 79.0
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.0e-42 174.5 99 80.8
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 7.0e-42 174.5 100 79.0
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.1e-42 174.1 100 79.0
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.2e-41 173.7 103 75.7
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.2e-41 173.7 100 79.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.2e-41 173.7 105 75.2
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-41 173.3 100 78.0
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-41 173.3 100 78.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.6e-41 173.3 100 79.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.0e-41 172.9 120 67.5
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 2.0e-41 172.9 100 79.0
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.0e-41 172.9 100 78.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.6e-41 172.6 100 79.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.5e-41 172.2 100 79.0
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.5e-41 172.2 100 79.0
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.5e-41 172.2 99 78.8
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 4.5e-41 171.8 105 75.2
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 7.7e-41 171.0 100 77.0
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.0e-40 170.6 105 76.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.3e-40 170.2 99 79.8
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.3e-40 170.2 100 78.0
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.3e-40 170.2 100 79.0
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.3e-40 170.2 100 76.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.7e-40 169.9 99 79.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.7e-40 169.9 100 77.0
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.2e-40 169.5 100 77.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.2e-40 169.5 100 77.0
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.9e-40 169.1 100 78.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.9e-40 169.1 100 77.0
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.8e-40 168.7 100 76.0
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.8e-40 168.7 100 76.0
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.0e-40 168.3 95 80.0
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 6.5e-40 167.9 100 75.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.5e-40 167.9 100 76.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.5e-40 167.9 101 74.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 6.5e-40 167.9 100 76.0
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 75.0
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 8.5e-40 167.5 100 76.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.1e-39 167.2 100 75.0
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-39 167.2 100 75.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-39 167.2 100 76.0
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.5e-39 166.8 100 76.0
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.5e-39 166.8 100 76.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.5e-39 166.8 100 77.0
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.9e-39 166.4 100 75.0
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 3.2e-39 165.6 112 71.4
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.2e-39 165.6 105 73.3
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.2e-39 165.6 112 67.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.2e-39 165.2 100 76.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.5e-39 164.9 100 74.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 7.2e-39 164.5 100 74.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 7.2e-39 164.5 100 74.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 9.4e-39 164.1 100 74.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.2e-38 163.7 100 73.0
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.7e-38 161.8 120 63.3
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 4.7e-38 161.8 100 74.0
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 6.1e-38 161.4 100 74.0
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.0e-37 160.6 100 72.0
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.8e-37 159.8 100 74.0
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.3e-37 159.5 100 72.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.3e-37 159.5 100 72.0
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-37 159.5 100 72.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.0e-37 158.7 100 75.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 4.0e-37 158.7 105 68.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.7e-37 157.9 100 72.0
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 6.7e-37 157.9 113 61.1
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 8.8e-37 157.5 94 75.5
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.5e-36 156.8 114 64.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.3e-36 155.6 116 62.1
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.4e-36 155.2 100 70.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 9.7e-36 154.1 100 68.0
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.2e-35 152.9 100 68.0
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.3e-35 151.4 107 63.6
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.1e-34 150.6 110 63.6
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-34 149.4 100 65.0
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 4.1e-34 148.7 99 65.7
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 4.1e-34 148.7 137 56.2
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-33 147.1 115 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 3.5e-33 145.6 131 54.2
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.9e-32 142.5 107 66.4
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.5e-31 140.2 131 55.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.5e-31 139.4 100 60.0
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.2e-31 139.0 140 52.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 7.2e-31 137.9 100 58.0
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.6e-30 136.7 100 61.0
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.7e-30 136.0 94 66.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.6e-30 135.6 82 75.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.2e-23 112.5 71 76.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.3e-16 89.7 59 66.1
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.1e-15 87.4 50 78.0
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.5e-15 87.0 93 47.3
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-15 86.7 98 45.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.3e-15 85.5 71 56.3
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 7.3e-15 84.7 50 70.0
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.6e-14 83.6 55 69.1
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-14 83.6 66 59.1
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.0e-13 79.0 91 46.2
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.0e-12 76.6 45 77.8
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.4e-10 68.6 36 80.6
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.0e-08 62.8 38 76.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.9e-08 62.4 44 61.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 5.0e-08 62.0 94 39.4
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 6.2e-06 55.1 33 75.8


User provided reference genes

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