Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 2.3e-93 345.5 173 100.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.2e-68 263.5 171 72.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.7e-65 252.3 171 70.8
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.5e-65 251.9 172 70.3
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.3e-64 250.0 169 71.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.8e-64 249.6 169 68.6
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 8.7e-64 247.3 166 69.9
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.9e-63 246.1 171 67.8
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 5.6e-63 244.6 173 67.1
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-62 243.4 173 67.6
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.7e-62 241.9 171 67.3
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 8.1e-62 240.7 173 64.7
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 8.1e-62 240.7 173 65.3
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.8e-61 239.6 173 63.0
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 6.9e-61 237.7 173 65.9
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.2e-60 236.9 173 64.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.3e-59 233.4 173 64.2
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.7e-59 233.0 175 62.3
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.9e-59 232.3 174 62.1
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 4.9e-59 231.5 174 62.1
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.4e-58 229.9 176 62.5
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.5e-58 229.2 176 62.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.5e-58 228.0 175 61.7
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 7.1e-58 227.6 176 62.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.2e-57 226.9 171 64.3
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.1e-57 226.1 175 62.3
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.7e-57 225.7 174 63.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.7e-57 225.7 175 61.1
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.0e-56 223.8 175 62.9
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.3e-56 223.4 175 60.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.7e-56 221.1 174 60.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 8.7e-56 220.7 177 59.9
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.7e-56 220.7 172 62.8
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.7e-56 220.7 172 62.8
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.1e-55 220.3 174 62.1
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.5e-55 219.9 169 60.9
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 3.3e-55 218.8 176 60.8
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 4.3e-55 218.4 175 61.1
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 7.4e-55 217.6 176 59.7
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 7.4e-55 217.6 164 58.5
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.6e-54 216.5 174 59.2
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.6e-54 216.5 175 59.4
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.1e-54 216.1 172 61.6
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-54 216.1 172 61.6
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.8e-54 215.7 176 58.0
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.8e-54 215.7 176 58.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.2e-54 214.5 173 58.4
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 8.2e-54 214.2 174 59.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.1e-53 213.8 170 59.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.4e-53 213.4 171 57.9
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.8e-53 213.0 176 58.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 3.1e-53 212.2 171 57.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.2e-52 210.3 171 55.6
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.2e-52 210.3 171 55.6
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.0e-52 209.5 175 58.9
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.6e-52 209.1 177 55.9
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.6e-52 209.1 172 57.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 3.4e-52 208.8 175 57.1
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.8e-52 208.0 168 58.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.3e-51 206.8 172 55.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.7e-51 206.5 175 57.1
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-51 206.5 176 55.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.2e-51 206.1 175 56.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 2.2e-51 206.1 172 55.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.2e-51 206.1 175 55.4
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.8e-51 205.3 175 54.9
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.5e-51 204.5 165 58.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 6.5e-51 204.5 168 58.3
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 8.4e-51 204.1 168 61.9
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-50 203.8 171 55.6
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-50 203.8 171 55.6
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.4e-50 203.4 175 54.9
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.5e-50 202.6 166 54.8
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.5e-50 202.6 166 55.4
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.2e-50 202.2 166 54.8
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.2e-50 202.2 200 53.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.2e-50 202.2 171 57.3
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 5.5e-50 201.4 169 57.4
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 7.1e-50 201.1 172 54.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 7.1e-50 201.1 172 54.1
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.6e-49 199.9 170 51.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.6e-49 199.9 200 52.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.1e-49 199.5 175 56.6
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 3.5e-49 198.7 167 56.3
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 7.9e-49 197.6 164 54.3
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.3e-48 196.8 170 55.9
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.8e-48 196.4 173 55.5
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.8e-48 196.4 173 55.5
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 3.9e-48 195.3 175 52.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 5.1e-48 194.9 116 83.6
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 8.7e-48 194.1 166 55.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.1e-47 193.7 143 64.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.1e-47 193.7 201 50.7
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.5e-47 193.4 174 54.0
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.5e-47 192.6 171 54.4
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 9.7e-47 190.7 166 54.2
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-46 190.3 171 51.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.3e-46 190.3 166 53.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.8e-46 189.1 150 60.7
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.7e-46 188.7 195 50.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 6.3e-46 188.0 145 63.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.1e-45 187.2 168 52.4
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.4e-45 186.8 191 50.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.4e-45 186.0 196 49.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.1e-45 185.7 180 53.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.2e-44 183.7 143 61.5
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.5e-44 183.3 218 47.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.6e-44 182.6 201 48.3
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 2.6e-44 182.6 196 49.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.0e-43 180.6 196 49.0
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.3e-43 180.3 205 46.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.2e-43 179.5 205 46.3
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.9e-43 179.1 241 42.7
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.9e-43 179.1 204 47.5
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 5.0e-43 178.3 165 50.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 5.0e-43 178.3 201 47.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 8.5e-43 177.6 137 62.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-42 176.8 166 50.0
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.2e-42 175.3 171 54.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 7.2e-42 174.5 168 50.0
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 7.2e-42 174.5 173 50.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 6.1e-41 171.4 167 48.5
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 6.1e-41 171.4 123 63.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 6.7e-40 167.9 147 57.1
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.5e-36 155.2 180 46.7
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.3e-35 153.7 119 58.8
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.2e-35 152.9 112 64.3
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 8.5e-35 151.0 172 44.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.5e-34 149.4 107 63.6
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.2e-34 148.7 175 47.4
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.7e-33 146.0 145 46.2
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 6.7e-32 141.4 127 52.8
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-30 137.1 94 64.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.3e-30 137.1 169 45.6
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.0e-29 131.3 117 56.4
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.5e-28 130.2 99 62.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 4.5e-28 128.6 171 35.7
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-27 126.7 113 54.9
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 8.5e-27 124.4 166 46.4
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.5e-26 122.9 164 43.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.2e-26 122.1 110 53.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.4e-24 117.1 111 49.5
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.8e-24 116.7 172 40.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 7.5e-23 111.3 171 37.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 3.1e-21 105.9 175 32.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-20 104.0 82 67.1
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.5e-18 96.3 89 48.3
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.0e-16 90.9 128 45.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-15 87.0 61 59.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.4e-15 85.5 180 29.4
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.8e-15 84.3 59 71.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.1e-13 79.3 57 68.4
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 8.5e-11 71.2 61 60.7
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.9e-10 70.1 66 47.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 5.7e-07 58.5 112 30.4
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-06 56.6 49 55.1


User provided reference genes

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