Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0180G025 Amborella trichopoda HOM05D042338 ORTHO05D031092 6.3e-105 384.4 238 100.0
ATR0721G065 Amborella trichopoda HOM05D042338 ORTHO05D031092 1.4e-24 117.5 142 49.3
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 2.5e-13 80.1 128 35.2
Thhalv10022551m.g Eutrema salsugineum HOM05D003056 ORTHO05D003422 1.6e-12 77.4 140 32.9
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 2.8e-12 76.6 127 31.5
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 6.2e-12 75.5 136 33.1
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.1e-11 74.7 69 58.0
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.1e-11 74.7 136 33.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-11 73.9 81 46.9
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 9.0e-11 71.6 232 32.8
RhsimUnG0118600 Rhododendron simsii HOM05D000855 ORTHO05D008530 1.5e-10 70.9 134 32.8
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.6e-10 70.1 144 31.2
ATR0759G027 Amborella trichopoda HOM05D042338 ORTHO05D031092 3.4e-10 69.7 43 81.4
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 7.6e-10 68.6 119 32.8
Duzib150G0731 Durio zibethinus HOM05D003056 ORTHO05D003422 7.6e-10 68.6 137 29.2
Lj6g0004675 Lotus japonicus HOM05D003056 ORTHO05D003422 7.6e-10 68.6 125 27.2
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-09 68.2 73 47.9
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.3e-09 67.8 129 31.8
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.3e-09 67.8 129 28.7
CiPaw.08G035000 Carya illinoinensis HOM05D003056 ORTHO05D003422 1.7e-09 67.4 136 28.7
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 1.7e-09 67.4 125 28.0
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 2.2e-09 67.0 132 30.3
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 2.9e-09 66.6 138 26.8
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 2.9e-09 66.6 124 30.6
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 3.8e-09 66.2 136 30.9
Haze_21943 Corylus avellana HOM05D003056 ORTHO05D003422 4.9e-09 65.9 137 29.2
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 6.4e-09 65.5 142 31.0
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 6.4e-09 65.5 130 27.7
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 6.4e-09 65.5 136 29.4
DCAR_020128 Daucus carota HOM05D003056 ORTHO05D003422 8.4e-09 65.1 130 27.7
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 8.4e-09 65.1 117 29.9
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 8.4e-09 65.1 117 29.9
Cfa013401 Carpinus fangiana HOM05D003056 ORTHO05D003422 1.1e-08 64.7 137 29.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.1e-08 64.7 129 27.9
CSS0049173 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 1.4e-08 64.3 130 26.9
COL.COLO4_27086 Corchorus olitorius HOM05D001673 ORTHO05D002312 1.4e-08 64.3 135 28.1
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 1.4e-08 64.3 126 29.4
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 1.4e-08 64.3 125 24.0
Atru.chr13.1536 Acer truncatum HOM05D006174 ORTHO05D007987 1.9e-08 63.9 234 33.8
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 1.9e-08 63.9 117 29.1
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.9e-08 63.9 107 31.8
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 1.9e-08 63.9 121 30.6
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 1.9e-08 63.9 117 29.9
SGA_v2.0_scaffold66G22432 Striga asiatica HOM05D003056 ORTHO05D003422 1.9e-08 63.9 127 27.6
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 2.5e-08 63.5 124 28.2
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 3.2e-08 63.2 123 32.5
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 3.2e-08 63.2 121 25.6
C03p59390 Brassica napus HOM05D003056 ORTHO05D003422 4.2e-08 62.8 129 29.5
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 4.2e-08 62.8 106 33.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.2e-08 62.8 50 56.0
Peaxi162Scf01124g10012 Petunia axillaris HOM05D003056 ORTHO05D003422 4.2e-08 62.8 137 27.0
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 4.2e-08 62.8 131 31.3
Sc05g0000680 Simmondsia chinensis HOM05D003056 ORTHO05D003422 4.2e-08 62.8 130 26.9
VMungo0464G0716 Vigna mungo HOM05D003056 ORTHO05D003422 4.2e-08 62.8 122 27.0
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 5.5e-08 62.4 107 30.8
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 5.5e-08 62.4 135 24.4
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 5.5e-08 62.4 127 26.0
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 5.5e-08 62.4 123 27.6
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 5.5e-08 62.4 107 31.8
Actinidia23531 Actinidia chinensis HOM05D000424 ORTHO05D038032 7.1e-08 62.0 127 27.6
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 7.1e-08 62.0 134 26.9
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 7.1e-08 62.0 107 30.8
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.1e-08 62.0 134 27.6
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.1e-08 62.0 134 27.6
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 7.1e-08 62.0 134 27.6
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 7.1e-08 62.0 127 27.6
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 9.3e-08 61.6 127 27.6
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 1.2e-07 61.2 122 31.1
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 1.2e-07 61.2 137 27.0
Pp3c6_26920 Physcomitrium patens HOM05D003056 ORTHO05D037348 1.2e-07 61.2 123 28.5
Thecc.09G174700 Theobroma cacao HOM05D003056 ORTHO05D003422 1.2e-07 61.2 132 27.3
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 1.6e-07 60.8 112 26.8
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 1.6e-07 60.8 135 26.7
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 1.6e-07 60.8 117 29.1
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.6e-07 60.8 107 30.8
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 2.1e-07 60.5 265 20.8
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 2.1e-07 60.5 148 27.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.1e-07 60.5 135 24.4
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-07 60.1 42 59.5
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.7e-07 60.1 128 28.1
MBI18_g10589_MAGBIO Magnolia biondii HOM05D018609 ORTHO05D019561 2.7e-07 60.1 228 42.5
Manes.14G156601 Manihot esculenta HOM05D003056 ORTHO05D003422 2.7e-07 60.1 123 26.8
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 2.7e-07 60.1 123 26.0
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 3.5e-07 59.7 132 27.3
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 3.5e-07 59.7 109 33.9
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.6e-07 59.3 134 25.4
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 4.6e-07 59.3 107 29.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 6.0e-07 58.9 228 22.8
AagrBONN_evm.TU.Sc2ySwM_228.1439 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.9e-07 58.5 225 22.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 7.9e-07 58.5 118 28.8
Aqoxy7G02351 Aquilegia oxysepala HOM05D003056 ORTHO05D003422 1.0e-06 58.2 125 26.4
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.0e-06 58.2 129 29.5
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.0e-06 58.2 107 30.8
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 1.3e-06 57.8 99 32.3
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.3e-06 57.8 106 29.2
TAR629G1245 Trochodendron aralioides HOM05D018609 ORTHO05D019561 1.3e-06 57.8 138 24.6
Atru.chr13.2608 Acer truncatum HOM05D037598 ORTHO05D026237 1.8e-06 57.4 99 33.3
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 1.8e-06 57.4 105 29.5
AUR62002247 Chenopodium quinoa HOM05D006556 ORTHO05D008146 1.8e-06 57.4 126 30.2
Haze_12045 Corylus avellana HOM05D002216 ORTHO05D007773 1.8e-06 57.4 123 30.1
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 1.8e-06 57.4 119 29.4
SalBow5G5544 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.3e-06 57.0 116 29.3
CARHR083400 Cardamine hirsuta HOM05D000001 ORTHO05D000003 3.0e-06 56.6 119 31.1
FAN07G1351 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.0e-06 56.6 119 29.4
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 3.0e-06 56.6 119 26.1
Nn7g38347 Nelumbo nucifera HOM05D002453 ORTHO05D002107 3.0e-06 56.6 129 20.9
Nn7g38348 Nelumbo nucifera HOM05D002453 ORTHO05D002107 3.0e-06 56.6 129 20.9
Prupe.6G007300 Prunus persica HOM05D002453 ORTHO05D002107 3.0e-06 56.6 138 27.5
THA.LOC104804489 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.0e-06 56.6 121 31.4
HPP92_000751 Vanilla planifolia HOM05D005973 ORTHO05D007285 3.0e-06 56.6 139 32.4
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 3.9e-06 56.2 121 30.6
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 3.9e-06 56.2 123 29.3
Ca_08075_v3 Cicer arietinum L. HOM05D008684 ORTHO05D010796 3.9e-06 56.2 141 29.1
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 3.9e-06 56.2 121 25.6
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 3.9e-06 56.2 117 29.9
PSO675G2690 Papaver somniferum HOM05D000001 ORTHO05D000003 3.9e-06 56.2 109 27.5
PSO732G0143 Papaver somniferum HOM05D000001 ORTHO05D000003 3.9e-06 56.2 109 27.5
Cfa009012 Carpinus fangiana HOM05D002216 ORTHO05D007773 5.1e-06 55.8 120 29.2
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 5.1e-06 55.8 129 27.9
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 5.1e-06 55.8 108 28.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 5.1e-06 55.8 152 25.0
AagrBONN_evm.TU.Sc2ySwM_228.3876 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.7e-06 55.5 135 22.2
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 6.7e-06 55.5 105 29.5
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 6.7e-06 55.5 105 29.5
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 6.7e-06 55.5 105 29.5
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 6.7e-06 55.5 60 43.3
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 6.7e-06 55.5 97 29.9
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 6.7e-06 55.5 121 24.8
TAR633G1701 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.7e-06 55.5 126 26.2
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 8.7e-06 55.1 125 24.8
DCAR_025559 Daucus carota HOM05D007168 ORTHO05D009495 8.7e-06 55.1 152 24.3
Duzib150G1593 Durio zibethinus HOM05D003056 ORTHO05D003422 8.7e-06 55.1 120 28.3
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 8.7e-06 55.1 140 25.0
ECA236G4894 Erigeron canadensis HOM05D000300 ORTHO05D000383 8.7e-06 55.1 137 29.2
MBI13_g04763_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 8.7e-06 55.1 114 28.9
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 8.7e-06 55.1 105 28.6


User provided reference genes

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