Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-23 112.5 54 100.0
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 6.1e-16 86.7 52 78.8
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.0e-12 73.2 54 70.4
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 9.2e-12 72.8 52 69.2
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.0e-10 69.3 52 67.3
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.0e-10 69.3 52 67.3
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.0e-10 69.3 52 67.3
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.0e-10 69.3 52 67.3
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.3e-10 68.9 52 65.4
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.3e-10 68.9 52 65.4
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.3e-10 68.9 52 65.4
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.3e-10 68.9 52 67.3
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-10 68.6 53 69.8
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 2.3e-10 68.2 53 66.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.3e-10 68.2 36 88.9
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 2.3e-10 68.2 36 88.9
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 2.3e-10 68.2 36 88.9
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 52 67.3
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.9e-10 67.8 36 88.9
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.9e-10 67.8 36 88.9
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.9e-10 67.8 49 69.4
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 2.9e-10 67.8 36 88.9
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 2.9e-10 67.8 36 88.9
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.9e-10 67.8 36 88.9
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.9e-10 67.8 36 88.9
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 2.9e-10 67.8 36 88.9
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.9e-10 67.4 36 86.1
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.9e-10 67.4 36 86.1
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 3.9e-10 67.4 36 86.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.9e-10 67.4 36 86.1
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.9e-10 67.4 36 86.1
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.0e-10 67.0 36 88.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 6.6e-10 66.6 36 88.9
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 6.6e-10 66.6 36 88.9
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 8.6e-10 66.2 36 86.1
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.5e-09 65.5 52 65.4
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.5e-09 65.5 36 86.1
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.5e-09 65.5 36 86.1
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-09 65.1 36 83.3
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.9e-09 65.1 49 67.3
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.9e-09 65.1 36 86.1
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 1.9e-09 65.1 52 65.4
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 1.9e-09 65.1 36 86.1
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.5e-09 64.7 36 83.3
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 3.3e-09 64.3 35 88.6
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.3e-09 64.3 52 63.5
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.3e-09 64.3 36 83.3
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.3e-09 64.3 52 65.4
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.3e-09 63.9 36 80.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.6e-09 63.5 52 57.7
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 9.5e-09 62.8 36 83.3
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-08 62.4 36 80.6
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-08 62.4 36 80.6
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-08 62.4 36 80.6
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-08 62.4 36 80.6
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.1e-08 61.6 52 59.6
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.1e-08 61.6 36 83.3
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.8e-08 61.2 52 63.5
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.6e-08 60.8 36 80.6
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 6.1e-08 60.1 37 75.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 6.1e-08 60.1 37 75.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 8.0e-08 59.7 36 80.6
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-07 58.5 37 73.0
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-07 58.5 37 73.0
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.8e-07 58.5 36 80.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.3e-07 58.2 52 63.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.1e-07 57.8 53 58.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-06 55.8 29 86.2
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.4e-06 54.3 36 72.2
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.4e-06 54.3 36 72.2


User provided reference genes

Program Settings