Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.1e-211 738.8 377 100.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 7.5e-153 544.3 360 74.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.0e-149 531.6 360 71.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.2e-147 526.9 360 72.2
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 6.2e-147 524.6 356 72.8
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.4e-143 513.5 360 70.3
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 4.1e-143 511.9 360 70.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.0e-142 509.6 360 69.7
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 6.0e-142 508.1 360 70.3
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.0e-141 505.0 360 69.2
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.0e-141 505.0 360 69.2
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.5e-140 502.7 358 67.0
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.8e-139 499.2 351 69.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.8e-139 499.2 360 68.6
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 3.6e-139 498.8 359 68.5
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 6.2e-139 498.0 354 69.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.3e-138 496.1 360 68.3
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.3e-138 496.1 360 68.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 5.2e-138 495.0 357 68.1
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 6.8e-138 494.6 360 68.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 6.8e-138 494.6 360 68.1
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 8.9e-138 494.2 360 67.8
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.2e-137 493.8 360 68.1
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.6e-137 492.7 361 67.0
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.6e-137 492.7 356 68.5
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.4e-137 492.3 353 68.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.4e-137 491.9 353 68.8
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 4.4e-137 491.9 363 68.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 7.5e-137 491.1 353 68.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.7e-136 490.0 359 68.2
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.7e-136 490.0 353 68.6
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.9e-136 489.2 360 67.5
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.7e-136 488.8 360 67.8
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.4e-136 488.0 360 67.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.4e-136 488.0 360 67.5
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.4e-135 486.9 356 68.0
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.4e-135 486.1 360 67.2
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.2e-135 485.7 355 65.9
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.2e-135 485.7 360 67.2
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.1e-135 485.3 360 66.9
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.1e-135 484.6 360 66.9
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.2e-134 483.8 357 67.2
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.2e-134 483.8 371 65.8
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.6e-134 483.4 360 66.4
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.1e-134 483.0 357 67.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.7e-134 482.6 365 66.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.5e-134 482.3 360 66.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.5e-134 482.3 364 67.0
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.0e-133 480.7 351 68.9
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.3e-133 480.3 365 65.8
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 3.9e-133 478.8 345 67.8
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 6.6e-133 478.0 367 66.5
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 6.6e-133 478.0 356 66.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 2.5e-132 476.1 356 66.0
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 4.3e-132 475.3 353 67.4
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.3e-132 475.3 359 65.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 5.6e-132 474.9 360 65.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 9.5e-132 474.2 360 65.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 9.5e-132 474.2 360 65.3
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.1e-131 473.0 358 65.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.1e-131 473.0 360 66.7
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 6.2e-131 471.5 359 64.9
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 6.2e-131 471.5 362 65.5
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.4e-130 470.3 360 65.6
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.4e-130 470.3 360 64.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.1e-130 469.2 356 66.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 4.0e-130 468.8 360 65.8
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 5.2e-130 468.4 360 65.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 6.8e-130 468.0 344 66.3
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 5.8e-129 464.9 361 65.7
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.7e-128 463.4 360 64.4
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 8.4e-128 461.1 360 64.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.4e-127 460.3 359 65.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.9e-127 459.9 360 63.9
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.4e-127 459.5 357 65.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 9.2e-127 457.6 360 66.1
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.5e-126 455.7 315 70.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.0e-125 454.1 352 64.2
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.3e-125 453.8 367 61.3
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 8.6e-125 451.1 350 65.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.9e-124 449.9 357 65.0
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 7.3e-124 448.0 357 64.1
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.2e-123 447.2 372 58.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.6e-123 446.8 367 59.4
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.2e-122 441.8 385 61.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.0e-121 439.9 321 68.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 4.4e-121 438.7 393 59.5
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.7e-120 436.8 357 61.6
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.2e-120 436.4 394 58.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.1e-119 434.1 358 63.1
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.9e-119 433.3 358 61.7
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 3.2e-119 432.6 374 57.5
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 4.2e-119 432.2 316 69.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.4e-119 431.8 359 60.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-118 430.3 356 61.2
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.1e-118 429.9 358 61.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 4.6e-118 428.7 356 61.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.6e-118 428.7 356 61.0
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.0e-117 427.6 308 68.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 3.9e-117 425.6 358 60.3
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 3.9e-117 425.6 358 60.3
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 6.6e-117 424.9 361 60.9
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.9e-116 423.3 360 62.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 5.6e-116 421.8 358 60.3
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 5.6e-116 421.8 357 60.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.3e-115 420.6 362 59.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.8e-114 416.8 361 59.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.8e-114 416.8 361 59.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 4.0e-114 415.6 361 59.6
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 5.3e-114 415.2 361 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.0e-113 413.3 384 55.7
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 4.4e-113 412.1 358 60.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 7.6e-113 411.4 361 59.6
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 7.6e-113 411.4 365 60.3
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 4.9e-112 408.7 361 59.8
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 6.4e-112 408.3 358 59.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-111 407.1 361 59.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.4e-111 407.1 361 59.0
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 3.2e-111 406.0 358 58.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.2e-110 404.1 361 59.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-109 400.2 360 56.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.5e-108 397.1 358 57.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.6e-108 394.4 360 58.9
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 6.2e-107 391.7 347 57.3
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.4e-103 380.6 375 55.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 7.1e-103 378.3 359 54.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.5e-95 353.2 275 64.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.5e-95 353.2 336 57.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.5e-87 326.6 239 69.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.1e-86 323.6 235 70.6
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.6e-83 313.9 241 63.1
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 6.9e-82 308.5 343 49.9
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.0e-80 304.7 353 49.0
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.4e-79 300.8 221 64.7
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.5e-68 264.2 366 44.0
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.0e-68 263.8 356 40.4
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 5.2e-61 239.2 347 38.9
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 8.5e-56 221.9 322 43.8
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-54 217.2 214 54.2
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.5e-52 211.1 141 70.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.2e-48 197.2 174 60.9
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-44 184.9 189 56.1
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-43 181.4 310 39.7
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.1e-42 176.8 304 39.8
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 5.6e-39 166.0 189 51.3
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 9.8e-36 155.2 333 31.2
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-27 127.9 80 70.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.2e-26 123.6 149 47.0
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.2e-26 123.6 149 47.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 5.0e-24 116.3 102 61.8
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 4.7e-22 109.8 115 48.7
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-19 101.3 75 61.3
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-19 101.3 75 61.3
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.2e-18 97.1 76 64.5
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 5.6e-15 86.3 370 21.9
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.0e-12 77.8 63 58.7
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.6e-08 62.8 40 72.5
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.1e-07 62.0 53 64.2
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.3e-07 60.1 56 55.4
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.8e-06 57.4 48 54.2
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 6.2e-06 56.2 48 52.1


User provided reference genes

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