Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0124G014 Amborella trichopoda HOM05D000093 ORTHO05D007434 7.8e-58 226.9 111 100.0
MD14G1247400 Malus domestica HOM05D000093 ORTHO05D007434 2.4e-14 82.4 44 77.3
Prupe.5G245500 Prunus persica HOM05D000093 ORTHO05D007434 6.9e-14 80.9 44 75.0
RcHm_v2.0_Chr7g0176891 Rosa chinensis HOM05D000093 ORTHO05D007434 9.0e-14 80.5 44 75.0
Haze_18403 Corylus avellana HOM05D000093 ORTHO05D007434 1.5e-13 79.7 114 40.4
FvH4_5g18610 Fragaria vesca HOM05D000093 ORTHO05D007434 1.5e-13 79.7 44 72.7
FAN18G2926 Fragaria x ananassa HOM05D000093 ORTHO05D007434 1.5e-13 79.7 44 72.7
Atru.chr9.26 Acer truncatum HOM05D000093 ORTHO05D007434 2.0e-13 79.3 44 72.7
FAN04G0630 Fragaria x ananassa HOM05D000093 ORTHO05D007434 2.0e-13 79.3 44 72.7
Lalb_Chr14g0370121 Lupinus albus HOM05D000093 ORTHO05D007434 2.0e-13 79.3 44 75.0
Sed0025784 Sechium edule HOM05D000093 ORTHO05D007434 2.0e-13 79.3 45 68.9
GSVIVG01024242001 Vitis vinifera HOM05D000093 ORTHO05D007434 2.0e-13 79.3 44 72.7
FAN13G1674 Fragaria x ananassa HOM05D000093 ORTHO05D007434 2.6e-13 79.0 44 72.7
arahy.Tifrunner.gnm1.ann1.1R2DUV Arachis hypogaea HOM05D000093 ORTHO05D007434 3.4e-13 78.6 44 75.0
arahy.Tifrunner.gnm1.ann1.210MU5 Arachis hypogaea HOM05D000093 ORTHO05D007434 3.4e-13 78.6 44 75.0
DCAR_023236 Daucus carota HOM05D000093 ORTHO05D007434 4.5e-13 78.2 44 68.2
Glyma.16G210300 Glycine max HOM05D000093 ORTHO05D007434 4.5e-13 78.2 44 75.0
Glyma.09G160900 Glycine max HOM05D000093 ORTHO05D007434 5.9e-13 77.8 44 75.0
Oeu057512.1 Olea europaea HOM05D000093 ORTHO05D007434 7.6e-13 77.4 44 68.2
Aqoxy3G04337 Aquilegia oxysepala HOM05D000093 ORTHO05D007434 1.0e-12 77.0 43 76.7
FAN08G2723 Fragaria x ananassa HOM05D000093 ORTHO05D007434 1.0e-12 77.0 44 70.5
Nn4g25058 Nelumbo nucifera HOM05D000093 ORTHO05D007434 1.0e-12 77.0 44 72.7
CsaV3_6G000290 Cucumis sativus L. HOM05D000093 ORTHO05D007434 1.3e-12 76.6 45 68.9
Medtr6g069000 Medicago truncatula HOM05D000093 ORTHO05D007434 1.3e-12 76.6 44 72.7
Potri.017G154600 Populus trichocarpa HOM05D000093 ORTHO05D007434 1.3e-12 76.6 44 70.5
CANSAT80G1814 Cannabis sativa HOM05D000093 ORTHO05D007434 2.2e-12 75.9 44 72.7
Sopen03g029750 Solanum pennellii HOM05D000093 ORTHO05D007434 2.2e-12 75.9 44 68.2
VMungo0464G1413 Vigna mungo HOM05D000093 ORTHO05D007434 2.2e-12 75.9 44 72.7
C06p47540 Brassica napus HOM05D000093 ORTHO05D007434 2.9e-12 75.5 45 66.7
BolC6t39792H Brassica oleracea HOM05D000093 ORTHO05D007434 2.9e-12 75.5 45 66.7
MBI03_g11901_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D007434 2.9e-12 75.5 44 70.5
Phvul.004G136300 Phaseolus vulgaris HOM05D000093 ORTHO05D007434 2.9e-12 75.5 44 72.7
Solyc03g019870.4 Solanum lycopersicum HOM05D000093 ORTHO05D007434 2.9e-12 75.5 44 68.2
PGSC0003DMG400015278 Solanum tuberosum HOM05D000093 ORTHO05D007434 2.9e-12 75.5 44 68.2
MSTRG.11568 Avicennia marina HOM05D000093 ORTHO05D007434 3.8e-12 75.1 44 70.5
Thecc.03G073700 Theobroma cacao HOM05D000093 ORTHO05D007434 5.0e-12 74.7 44 68.2
CAN.G861.20 Capsicum annuum HOM05D000093 ORTHO05D007434 6.5e-12 74.3 44 65.9
Cfa017809 Carpinus fangiana HOM05D000093 ORTHO05D007434 6.5e-12 74.3 44 68.2
Ciclev10023543m.g Citrus clementina HOM05D000093 ORTHO05D007434 6.5e-12 74.3 44 63.6
Hma1.2p1_1807F.1_g303330 Hydrangea macrophylla HOM05D000093 ORTHO05D007434 6.5e-12 74.3 44 70.5
AL2G33110 Arabidopsis lyrata HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
AT1G73340 Arabidopsis thaliana HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
BcaB03g15051 Brassica carinata HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
BcaC08g46758 Brassica carinata HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
A07p39310 Brassica napus HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
BraA07t31480Z Brassica rapa HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
Carub.0002s2008 Capsella rubella HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
CARHR066390 Cardamine hirsuta HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
COL.COLO4_13240 Corchorus olitorius HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 65.9
Psat1g119000 Pisum sativum HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 70.5
PGR044G2160 Punica granatum HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 68.2
TPR.G31354 Trifolium pratense HOM05D000093 ORTHO05D007434 1.1e-11 73.6 44 68.2
Migut.O00285 Erythranthe guttata HOM05D000093 ORTHO05D007434 1.4e-11 73.2 52 61.5
PSO063G2239 Papaver somniferum HOM05D000093 ORTHO05D007434 1.4e-11 73.2 44 63.6
PSO782G3143 Papaver somniferum HOM05D000093 ORTHO05D007434 1.4e-11 73.2 44 63.6
CiPaw.15G108000 Carya illinoinensis HOM05D000093 ORTHO05D007434 1.9e-11 72.8 44 65.9
Lj2g0006613 Lotus japonicus HOM05D000093 ORTHO05D007434 1.9e-11 72.8 44 70.5
SalBow5G5704 Salvia bowleyana HOM05D000093 ORTHO05D007434 1.9e-11 72.8 44 68.2
Peaxi162Scf00171g00050 Petunia axillaris HOM05D000093 ORTHO05D007434 3.2e-11 72.0 44 63.6
Aa31LG4G3610 Aethionema arabicum HOM05D000093 ORTHO05D007434 4.2e-11 71.6 44 63.6
Eucgr.K02335 Eucalyptus grandis HOM05D000093 ORTHO05D007434 4.2e-11 71.6 44 65.9
Thhalv10018455m.g Eutrema salsugineum HOM05D000093 ORTHO05D007434 4.2e-11 71.6 44 63.6
Rhsim08G0125700 Rhododendron simsii HOM05D000093 ORTHO05D007434 5.5e-11 71.2 63 50.8
Sp5g28270 Schrenkiella parvula HOM05D000093 ORTHO05D007434 5.5e-11 71.2 44 63.6
THA.LOC104812188 Tarenaya hassleriana HOM05D000093 ORTHO05D007434 5.5e-11 71.2 44 61.4
SGA_v2.0_scaffold25G10725 Striga asiatica HOM05D000093 ORTHO05D007434 7.2e-11 70.9 44 65.9
Cpa.g.sc628.2 Carica papaya HOM05D000093 ORTHO05D007434 9.4e-11 70.5 41 63.4
vmacro17758 Vaccinium macrocarpon HOM05D000093 ORTHO05D007434 1.6e-10 69.7 46 60.9
CSS0027949 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D007434 2.1e-10 69.3 43 65.1
ClCG06G004140 Citrullus lanatus HOM05D000093 ORTHO05D007434 2.7e-10 68.9 45 64.4
Cc00_g04730 Coffea canephora HOM05D000093 ORTHO05D007434 4.6e-10 68.2 41 70.7
Cc00_g04740 Coffea canephora HOM05D000093 ORTHO05D007434 7.9e-10 67.4 61 52.5
Lsat_1_v5_gn_8_133361 Lactuca sativa HOM05D000093 ORTHO05D007434 3.0e-09 65.5 44 61.4
HanXRQChr03g0087201 Helianthus annuus HOM05D000093 ORTHO05D007434 6.7e-09 64.3 44 63.6
TWI81G0359 Tripterygium wilfordii HOM05D000093 ORTHO05D007434 6.7e-09 64.3 44 59.1
Manes.02G213900 Manihot esculenta HOM05D000093 ORTHO05D007434 1.5e-08 63.2 44 59.1
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 3.3e-08 62.0 37 70.3
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 3.3e-08 62.0 37 70.3
ECA233G2840 Erigeron canadensis HOM05D000093 ORTHO05D007434 2.8e-07 58.9 44 54.5
HPP92_019875 Vanilla planifolia HOM05D000093 ORTHO05D000605 2.8e-07 58.9 46 52.2
HPP92_019884 Vanilla planifolia HOM05D000093 ORTHO05D000605 6.3e-07 57.8 44 54.5
Peaxi162Scf00111g00321 Petunia axillaris HOM05D000093 ORTHO05D000605 1.8e-06 56.2 49 53.1
SEGI_14857 Sequoiadendron giganteum HOM05D000093 ORTHO05D007434 2.4e-06 55.8 35 65.7
Solyc07g056160.4 Solanum lycopersicum HOM05D000093 ORTHO05D000605 4.1e-06 55.1 49 53.1
Sopen07g029520 Solanum pennellii HOM05D000093 ORTHO05D000605 4.1e-06 55.1 49 53.1
PGSC0003DMG400017354 Solanum tuberosum HOM05D000093 ORTHO05D000605 4.1e-06 55.1 49 53.1
Nitab4.5_0001022g0020 Nicotiana tabacum HOM05D000093 ORTHO05D000605 6.9e-06 54.3 49 53.1


User provided reference genes

Program Settings