Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 4.4e-141 504.6 250 100.0
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.0e-102 375.2 254 74.4
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 7.1e-99 364.4 252 73.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.2e-98 363.6 250 73.2
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.6e-98 363.2 251 72.9
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.3e-97 360.1 251 72.9
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 2.3e-97 359.4 254 72.0
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 6.6e-97 357.8 254 72.8
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 8.6e-97 357.5 253 71.9
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 8.6e-97 357.5 254 71.3
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 1.1e-96 357.1 262 70.2
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.1e-96 357.1 252 70.2
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 2.5e-96 355.9 253 71.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 3.3e-96 355.5 254 71.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 3.3e-96 355.5 252 69.8
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 4.3e-96 355.1 252 69.8
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 5.6e-96 354.8 253 71.9
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 5.6e-96 354.8 254 72.0
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.6e-95 353.2 248 70.6
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.6e-95 353.2 228 76.8
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.1e-95 352.8 255 70.6
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 2.1e-95 352.8 236 76.7
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 2.1e-95 352.8 251 72.5
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 2.8e-95 352.4 254 71.7
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 6.2e-95 351.3 252 69.8
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 8.1e-95 350.9 252 71.4
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.1e-94 350.5 258 69.8
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.3e-94 349.4 253 69.6
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 3.1e-94 349.0 254 69.7
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.1e-94 349.0 257 68.9
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 3.1e-94 349.0 251 70.5
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 4.0e-94 348.6 256 70.7
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 5.2e-94 348.2 257 68.5
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 5.2e-94 348.2 256 68.0
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 5.2e-94 348.2 257 69.3
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 6.8e-94 347.8 251 69.7
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 6.8e-94 347.8 254 71.3
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 8.9e-94 347.4 257 68.5
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.0e-93 346.3 252 71.8
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.0e-93 346.3 251 69.7
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.6e-93 345.9 251 69.7
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 2.6e-93 345.9 256 68.4
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 68.8
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 70.4
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 3.4e-93 345.5 255 67.8
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 5.8e-93 344.7 252 71.8
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 5.8e-93 344.7 253 68.8
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 5.8e-93 344.7 257 68.1
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 1.7e-92 343.2 252 68.7
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 2.9e-92 342.4 227 74.0
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 3.8e-92 342.0 254 70.1
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 4.9e-92 341.7 253 68.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.1e-91 340.5 220 76.4
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.1e-91 340.5 220 76.4
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.2e-91 339.0 238 73.9
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 5.4e-91 338.2 253 67.6
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 5.4e-91 338.2 253 66.8
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 7.1e-91 337.8 257 66.5
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.1e-91 337.8 232 72.8
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 7.1e-91 337.8 253 66.8
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 9.2e-91 337.4 250 68.4
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 9.2e-91 337.4 257 66.9
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 9.2e-91 337.4 254 66.5
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 1.2e-90 337.0 254 68.1
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 1.2e-90 337.0 254 68.1
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 1.2e-90 337.0 231 71.0
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 2.1e-90 336.3 259 67.6
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.7e-90 335.9 229 74.2
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.7e-90 335.9 253 66.4
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 6.0e-90 334.7 232 72.0
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 7.8e-90 334.3 226 72.1
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 7.8e-90 334.3 258 68.2
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.3e-89 333.6 253 66.4
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.7e-89 333.2 267 67.0
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.3e-89 332.8 250 65.6
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 3.0e-89 332.4 257 66.9
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 3.0e-89 332.4 241 71.0
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 3.9e-89 332.0 257 66.5
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 3.9e-89 332.0 258 66.7
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 6.6e-89 331.3 256 66.8
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 6.6e-89 331.3 254 68.9
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 8.6e-89 330.9 304 61.2
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 8.6e-89 330.9 263 66.2
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.9e-88 329.7 276 63.0
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 3.3e-88 328.9 238 69.3
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 4.3e-88 328.6 249 67.5
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 9.6e-88 327.4 229 72.1
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 1.2e-87 327.0 254 65.0
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.6e-87 326.6 269 65.1
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 4.7e-87 325.1 256 66.8
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.1e-86 323.9 222 71.2
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 1.8e-86 323.2 253 65.6
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 5.2e-86 321.6 222 71.2
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 1.2e-85 320.5 240 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 4.4e-85 318.5 253 65.6
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.5e-80 303.5 222 70.7
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.9e-80 303.1 257 64.2
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.0e-78 295.4 229 65.9
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 6.9e-78 294.7 245 63.7
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.0e-77 293.1 256 59.4
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.9e-76 289.3 199 72.4
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 3.8e-76 288.9 224 65.6
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 2.3e-73 279.6 221 63.3
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.5e-72 276.2 202 66.3
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 4.3e-72 275.4 206 68.9
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 4.0e-70 268.9 160 80.0
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 3.8e-68 262.3 236 63.1
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 6.4e-68 261.5 257 56.8
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.3e-65 253.8 172 71.5
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.1e-64 250.8 243 55.1
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 4.0e-62 242.3 236 52.5
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 3.4e-61 239.2 194 62.9
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 1.0e-60 237.7 169 71.6
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 1.3e-60 237.3 161 72.0
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 8.4e-60 234.6 218 61.5
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.3e-57 226.5 246 51.6
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 5.0e-52 208.8 220 52.3
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.1e-50 203.4 257 50.2
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 4.6e-50 202.2 115 81.7
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 9.1e-46 188.0 135 67.4
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.0e-44 184.5 101 85.1
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.1e-40 171.0 266 40.2
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 5.3e-38 162.2 149 58.4
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 3.8e-36 156.0 141 61.0
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.8e-33 147.1 141 58.2
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 8.0e-26 121.7 67 82.1
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.3e-25 120.2 90 65.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.3e-23 114.4 117 53.0
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 1.7e-20 104.0 57 80.7
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 6.1e-18 95.5 72 61.1
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 3.4e-16 89.7 72 68.1
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.1e-14 84.7 78 57.7
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.4e-14 84.3 77 59.7
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 5.4e-14 82.4 47 80.9
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 1.0e-12 78.2 73 58.9
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-11 74.7 60 66.7
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 2.1e-10 70.5 39 82.1
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.7e-08 62.4 66 51.5
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 1.4e-06 57.8 104 41.3


User provided reference genes

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