Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-38 162.9 85 100.0
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 9.9e-29 129.8 67 95.5
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 2.4e-27 125.2 85 72.9
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 7.1e-27 123.6 84 71.4
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 2.1e-26 122.1 84 70.2
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 6.0e-26 120.6 85 70.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.0e-25 119.8 84 70.2
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 1.8e-25 119.0 85 70.6
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.3e-25 118.6 85 69.4
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 2.3e-25 118.6 85 68.2
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 3.0e-25 118.2 84 67.9
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 3.0e-25 118.2 85 69.4
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 3.0e-25 118.2 85 69.4
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 6.7e-25 117.1 85 69.4
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 6.7e-25 117.1 82 69.5
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 8.7e-25 116.7 86 70.9
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 8.7e-25 116.7 85 70.6
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.1e-24 116.3 84 71.4
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.1e-24 116.3 82 70.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.1e-24 116.3 83 71.1
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.5e-24 115.9 85 67.1
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 3.3e-24 114.8 85 68.2
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 3.3e-24 114.8 85 69.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 4.3e-24 114.4 82 68.3
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 4.3e-24 114.4 85 65.9
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 7.4e-24 113.6 85 70.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 7.4e-24 113.6 85 65.9
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 7.4e-24 113.6 85 68.2
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 7.4e-24 113.6 85 68.2
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 9.6e-24 113.2 85 64.7
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.3e-23 112.8 84 65.5
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.3e-23 112.8 86 69.8
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.3e-23 112.8 88 68.2
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.6e-23 112.5 85 65.9
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.6e-23 112.5 85 67.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.1e-23 112.1 85 67.1
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.1e-23 112.1 85 67.1
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.1e-23 112.1 85 67.1
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 2.1e-23 112.1 85 65.9
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.8e-23 111.7 85 65.9
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 4.8e-23 110.9 85 68.2
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.8e-23 110.9 86 67.4
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 4.8e-23 110.9 85 68.2
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 4.8e-23 110.9 84 67.9
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 8.2e-23 110.2 84 65.5
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 8.2e-23 110.2 88 67.0
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.1e-22 109.8 85 64.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.1e-22 109.8 85 68.2
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 2.4e-22 108.6 84 66.7
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 2.4e-22 108.6 84 64.3
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 4.0e-22 107.8 85 65.9
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 5.3e-22 107.5 85 62.4
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 6.9e-22 107.1 85 65.9
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 6.9e-22 107.1 81 67.9
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 6.9e-22 107.1 85 62.4
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 9.0e-22 106.7 85 65.9
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 2.0e-21 105.5 81 65.4
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 5.8e-21 104.0 83 63.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 7.6e-21 103.6 85 61.2
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 1.3e-20 102.8 85 60.0
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 3.8e-20 101.3 85 60.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.1e-19 99.8 81 67.9
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 7.1e-19 97.1 78 65.4
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.1e-18 95.5 86 64.0
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 4.6e-18 94.4 86 62.8
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 7.9e-18 93.6 86 62.8
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 7.9e-18 93.6 86 61.6
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 7.9e-18 93.6 86 59.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-17 93.2 74 63.5
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-17 93.2 74 63.5
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-17 93.2 74 63.5
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-17 93.2 74 63.5
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 3.0e-17 91.7 76 60.5
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 3.0e-17 91.7 71 60.6
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 3.0e-17 91.7 87 54.0
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.9e-17 91.3 77 59.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 6.7e-17 90.5 87 58.6
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 6.7e-17 90.5 87 58.6
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 6.7e-17 90.5 87 58.6
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 6.7e-17 90.5 87 58.6
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 6.7e-17 90.5 87 58.6
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 8.7e-17 90.1 87 58.6
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.9e-16 89.0 134 43.3
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.5e-16 88.6 70 64.3
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 4.3e-16 87.8 69 60.9
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 5.7e-16 87.4 87 56.3
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.6e-15 85.9 87 57.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.2e-15 85.5 86 53.5
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 3.1e-14 81.6 67 58.2
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 9.0e-14 80.1 69 62.3
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 9.0e-14 80.1 69 62.3
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 2.2e-12 75.5 55 65.5
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.9e-12 75.1 86 50.0
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.9e-11 72.4 55 60.0
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.9e-11 72.4 86 47.7
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.5e-11 72.0 69 60.9
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.5e-11 70.9 56 60.7
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 7.2e-11 70.5 77 48.1
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.6e-10 68.2 52 59.6
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 3.6e-10 68.2 55 60.0
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 4.6e-10 67.8 51 60.8
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 4.6e-10 67.8 56 55.4
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.0e-09 66.6 56 60.7
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.4e-09 66.2 55 58.2
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.8e-09 65.9 56 55.4
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 5.1e-09 64.3 55 60.0
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 3.3e-08 61.6 63 54.0
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 7.4e-08 60.5 83 44.6
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 2.2e-07 58.9 57 57.9


User provided reference genes

Program Settings