Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.9e-55 216.5 104 100.0
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.9e-38 161.8 103 78.6
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 7.1e-29 130.6 102 66.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.5e-26 122.9 79 74.7
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.3e-26 121.7 90 67.8
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-26 121.3 95 65.3
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.3e-25 119.8 70 80.0
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.6e-25 119.4 90 67.8
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 2.8e-25 118.6 67 82.1
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 2.8e-25 118.6 67 82.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.8e-25 118.6 70 78.6
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-25 118.6 70 80.0
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-25 118.6 70 80.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.7e-25 118.2 90 66.7
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.7e-25 118.2 90 66.7
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 4.8e-25 117.9 103 60.2
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 8.2e-25 117.1 70 78.6
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.1e-24 116.7 92 65.2
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.1e-24 116.7 70 77.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.8e-24 115.9 70 78.6
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.8e-24 115.9 70 78.6
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.8e-24 115.9 70 78.6
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.8e-24 115.9 70 78.6
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.8e-24 115.9 70 78.6
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.4e-24 115.5 70 75.7
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 4.1e-24 114.8 70 77.1
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 9.0e-24 113.6 71 76.1
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.5e-23 112.8 92 64.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-23 112.8 74 74.3
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-23 112.8 74 74.3
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-23 112.8 70 74.3
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.5e-23 112.8 64 81.2
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.0e-23 112.5 67 79.1
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 2.6e-23 112.1 70 75.7
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 2.6e-23 112.1 70 75.7
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 2.6e-23 112.1 70 75.7
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.6e-23 112.1 70 75.7
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.6e-23 112.1 92 60.9
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.4e-23 111.7 70 74.3
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.4e-23 111.7 70 74.3
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.4e-23 111.7 70 74.3
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.8e-23 110.9 70 75.7
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 5.8e-23 110.9 67 77.6
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 7.6e-23 110.5 67 77.6
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-22 110.2 70 72.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.0e-22 110.2 70 74.3
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.0e-22 110.2 70 74.3
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 1.0e-22 110.2 70 75.7
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-22 109.4 81 70.4
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.9e-22 108.6 70 72.9
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 2.9e-22 108.6 70 75.7
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 8.4e-22 107.1 70 71.4
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 8.4e-22 107.1 70 71.4
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 8.4e-22 107.1 70 71.4
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.4e-21 106.3 70 72.9
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.4e-21 106.3 70 72.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 1.9e-21 105.9 70 72.9
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.5e-21 105.5 70 74.3
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 9.3e-21 103.6 70 74.3
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.3e-19 99.0 59 76.3
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.9e-19 98.2 92 55.4
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 6.7e-19 97.4 67 71.6
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.7e-19 97.1 65 70.8
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-18 96.3 56 76.8
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 3.3e-18 95.1 64 68.8
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 9.7e-18 93.6 67 68.7
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.6e-17 92.8 65 67.7
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.6e-17 92.8 64 68.8
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 6.3e-17 90.9 67 65.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 6.3e-17 90.9 67 65.7
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-16 89.4 67 64.2
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.8e-16 89.4 67 64.2
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.4e-16 89.0 102 52.9
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 9.0e-16 87.0 102 50.0
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.4e-15 85.1 56 71.4
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 5.9e-15 84.3 49 79.6
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-14 83.2 53 71.7
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.2e-14 82.4 50 78.0
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 2.9e-14 82.0 54 72.2
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.5e-14 80.9 60 66.7
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.5e-14 80.9 60 66.7
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.1e-12 75.9 54 70.4
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 1.4e-11 73.2 42 83.3
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.1e-11 71.2 59 62.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.0e-10 69.3 41 80.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.5e-10 68.9 47 72.3
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 9.7e-10 67.0 59 59.3
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 9.7e-10 67.0 40 80.0
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.8e-09 65.5 44 70.5
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.8e-08 62.8 60 53.3
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 2.6e-07 58.9 42 71.4
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 7.7e-07 57.4 56 57.1
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.7e-06 56.2 38 78.9
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.7e-06 56.2 38 78.9
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 2.9e-06 55.5 36 75.0
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 8.5e-06 53.9 34 76.5


User provided reference genes

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