Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 0.0e+00 1571.2 863 100.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 2.3e-245 852.8 882 54.5
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.8e-238 827.8 886 55.8
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.1e-236 823.9 895 52.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.2e-235 820.5 875 54.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.0e-233 813.1 880 53.6
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.6e-228 795.0 896 53.1
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.0e-225 786.6 893 52.5
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.4e-225 785.8 872 53.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.1e-223 780.8 883 52.0
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.4e-223 780.4 879 53.2
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.4e-223 780.4 897 52.1
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 7.1e-223 778.1 881 52.8
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 7.8e-222 774.6 877 51.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.3e-221 773.9 886 52.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.3e-221 773.1 887 53.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.3e-221 773.1 881 54.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 7.3e-220 768.1 884 52.5
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.8e-219 766.1 884 51.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 4.0e-218 762.3 894 51.5
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 9.9e-217 757.7 895 52.0
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.4e-215 753.8 893 51.1
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.9e-215 753.4 881 52.2
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.3e-213 746.5 880 50.7
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.9e-213 745.7 891 50.5
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.6e-212 741.9 893 49.8
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.6e-212 741.9 879 51.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 9.6e-212 741.1 840 52.0
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.8e-211 739.6 841 53.3
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.0e-210 735.7 883 50.4
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 9.9e-209 731.1 893 50.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.9e-208 729.6 833 50.5
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.8e-208 729.2 875 50.7
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 6.4e-208 728.4 853 51.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.7e-205 720.3 892 49.9
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 6.6e-205 718.4 892 48.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.6e-203 713.8 864 49.0
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 4.8e-203 712.2 886 49.0
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 8.1e-203 711.4 830 51.7
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.1e-202 711.1 879 48.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.4e-202 710.7 883 48.4
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.5e-201 705.7 875 49.6
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 5.8e-201 705.3 879 48.1
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.2e-200 703.4 894 48.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.8e-200 702.6 850 50.0
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.9e-200 702.2 880 48.5
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 8.4e-200 701.4 887 48.5
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-199 700.7 875 49.5
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.1e-199 698.4 873 50.2
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 9.3e-199 698.0 883 48.0
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.0e-197 693.0 921 46.8
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.0e-197 693.0 898 46.9
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.1e-196 691.0 832 48.4
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.7e-195 686.0 829 51.0
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.8e-195 685.6 878 47.0
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-194 684.5 895 48.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.1e-194 684.5 874 47.8
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.2e-193 681.0 894 48.4
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 2.0e-193 680.2 884 47.3
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 2.0e-193 680.2 875 49.4
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.6e-193 679.9 903 48.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 4.5e-193 679.1 850 48.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.3e-192 677.6 902 47.3
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 2.2e-192 676.8 848 47.6
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 3.8e-192 676.0 897 47.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 3.2e-191 672.9 882 47.3
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 4.2e-191 672.5 880 48.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.6e-190 670.6 858 47.4
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.5e-190 669.5 726 52.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 6.0e-190 668.7 871 48.5
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 6.0e-190 668.7 888 47.9
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 7.9e-190 668.3 887 47.8
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.3e-189 667.5 882 47.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.6e-187 660.6 882 48.1
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.2e-187 658.7 794 50.5
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.1e-186 656.0 891 47.6
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 9.0e-186 654.8 886 46.6
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.2e-185 654.4 848 47.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.8e-185 652.1 883 47.8
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.9e-183 647.1 883 48.1
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 7.9e-182 641.7 841 46.0
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.9e-181 639.4 865 45.4
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.3e-180 636.0 843 48.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.6e-179 634.0 881 44.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 8.2e-179 631.7 888 43.9
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.1e-178 631.3 880 45.7
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.5e-177 627.5 886 44.2
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.5e-177 627.5 891 43.4
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.9e-176 623.2 870 43.7
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.9e-175 620.5 785 48.3
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.1e-173 612.5 751 48.2
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 5.1e-173 612.5 878 42.7
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.5e-172 610.1 820 44.3
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.7e-171 607.4 867 43.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.7e-171 607.4 891 44.2
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.5e-167 593.6 873 43.4
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.2e-167 592.8 887 42.7
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-166 590.9 751 46.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.9e-165 586.3 873 42.2
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.7e-164 582.4 877 42.5
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-161 574.7 880 42.3
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.6e-161 573.5 1049 39.6
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 8.5e-160 568.5 880 41.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.2e-159 566.2 876 41.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-158 564.7 877 40.7
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.0e-157 560.1 605 52.4
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.1e-156 558.1 844 43.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.1e-154 550.1 859 41.8
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.6e-153 547.7 628 55.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.0e-153 547.4 877 40.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 4.0e-149 533.1 868 41.2
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 2.6e-148 530.4 569 55.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.6e-148 530.4 879 39.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.7e-148 529.3 856 40.8
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 5.4e-146 522.7 641 50.4
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.7e-142 510.4 841 40.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 9.5e-135 485.3 400 67.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 3.6e-134 483.4 864 38.4
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.6e-132 477.2 898 38.1
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.7e-131 473.4 872 38.2
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.9e-122 444.5 1030 33.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 4.6e-113 413.3 446 51.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 3.0e-112 410.6 993 34.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.9e-112 410.2 824 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.6e-112 409.1 907 36.3
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-99 367.1 449 50.6
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.0e-96 357.5 767 36.4
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-88 332.4 339 53.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-87 328.9 247 68.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.6e-86 325.1 278 62.6
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 5.3e-85 320.1 979 30.6
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-77 295.8 548 39.4
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 2.4e-77 294.7 328 52.1
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.8e-70 271.2 818 32.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 9.7e-63 246.1 859 28.3
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 9.7e-63 246.1 859 28.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 5.9e-60 236.9 837 28.9
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.8e-56 225.3 315 44.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 4.5e-52 210.7 190 57.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.7e-52 209.9 396 38.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.9e-51 208.0 390 38.7
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.2e-50 204.5 221 48.0
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-50 204.5 390 38.5
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-50 204.5 408 38.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-46 192.6 353 38.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.1e-45 187.6 190 50.0
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 5.9e-44 183.7 387 36.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 8.0e-41 173.3 160 50.0
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-40 172.6 162 58.0
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.0e-40 171.4 173 60.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 8.8e-40 169.9 449 30.3
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.7e-39 167.2 184 52.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 7.5e-39 166.8 302 40.4
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 9.7e-39 166.4 294 40.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 3.7e-38 164.5 350 35.4
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-37 162.9 647 27.2
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-35 155.2 196 49.5
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.9e-35 154.8 156 51.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.2e-34 151.0 1154 25.4
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-31 141.0 162 51.9
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 4.8e-30 137.5 105 61.9
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.1e-29 134.4 878 26.8
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.2e-25 122.9 127 51.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.0e-24 119.8 127 56.7
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-24 119.0 122 61.5
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 9.8e-23 113.2 289 32.5
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.2e-22 112.1 288 31.9
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-18 99.0 285 30.5
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-18 99.0 285 30.5
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 7.3e-10 70.5 70 60.0
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.2e-08 64.3 53 60.4


User provided reference genes

Program Settings