Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 3.9e-274 947.6 497 100.0
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 1.0e-202 710.3 487 73.5
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 1.2e-201 706.8 506 71.5
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 1.3e-200 703.4 487 73.1
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 1.3e-200 703.4 488 72.7
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 1.8e-199 699.5 495 71.7
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 9.1e-199 697.2 492 72.0
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.5e-198 695.3 488 72.7
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 4.5e-198 694.9 489 71.8
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 1.0e-197 693.7 490 71.6
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.7e-197 693.0 492 72.8
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 5.0e-197 691.4 488 71.7
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 6.5e-197 691.0 487 72.1
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 6.5e-197 691.0 488 72.1
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 6.5e-197 691.0 487 72.1
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 1.1e-196 690.3 487 71.3
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 1.9e-196 689.5 489 72.6
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 4.2e-196 688.3 487 71.7
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 7.2e-196 687.6 487 71.3
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.2e-195 686.8 489 70.6
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 1.6e-195 686.4 488 71.3
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 1.6e-195 686.4 489 71.4
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 2.1e-195 686.0 494 71.1
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 2.7e-195 685.6 489 71.6
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 3.6e-195 685.3 488 73.0
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 4.7e-195 684.9 495 70.9
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 6.1e-195 684.5 492 70.5
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 8.0e-195 684.1 492 70.5
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 1.0e-194 683.7 490 70.8
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 1.4e-194 683.3 487 71.5
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 2.3e-194 682.6 492 71.7
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 2.3e-194 682.6 494 69.8
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.0e-194 682.2 492 69.9
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 3.0e-194 682.2 494 69.6
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 3.0e-194 682.2 487 71.9
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 4.0e-194 681.8 492 69.7
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 4.0e-194 681.8 487 71.5
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 5.2e-194 681.4 488 71.5
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 6.8e-194 681.0 487 71.9
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 8.8e-194 680.6 487 71.3
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 8.8e-194 680.6 491 70.1
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 1.2e-193 680.2 492 69.7
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 1.2e-193 680.2 488 70.7
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.5e-193 679.9 492 69.7
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 1.5e-193 679.9 487 70.8
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 2.0e-193 679.5 488 69.5
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 2.0e-193 679.5 493 70.2
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 2.6e-193 679.1 495 69.5
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 2.6e-193 679.1 488 70.5
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 3.4e-193 678.7 491 70.1
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 4.4e-193 678.3 494 69.6
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 4.4e-193 678.3 487 71.3
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 5.7e-193 677.9 491 70.3
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 7.5e-193 677.6 487 71.9
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 7.5e-193 677.6 491 70.7
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 9.8e-193 677.2 487 70.4
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 9.8e-193 677.2 488 71.7
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 9.8e-193 677.2 487 70.4
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 1.3e-192 676.8 491 69.5
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 1.7e-192 676.4 487 71.3
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 2.8e-192 675.6 488 71.1
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 3.7e-192 675.2 487 71.5
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 4.9e-192 674.9 493 68.6
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 6.3e-192 674.5 492 69.5
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 6.3e-192 674.5 495 69.9
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 6.3e-192 674.5 496 68.8
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.4e-191 672.5 492 69.1
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 2.4e-191 672.5 488 69.9
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 3.1e-191 672.2 491 71.1
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 4.1e-191 671.8 494 69.0
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 5.4e-191 671.4 489 71.2
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 5.4e-191 671.4 494 69.8
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 7.0e-191 671.0 487 70.2
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 7.0e-191 671.0 494 69.8
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 1.2e-190 670.2 492 69.7
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 2.7e-190 669.1 490 70.0
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 3.5e-190 668.7 493 69.0
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 3.5e-190 668.7 493 69.0
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 4.5e-190 668.3 495 68.7
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 1.0e-189 667.2 487 70.4
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 1.7e-189 666.4 487 69.4
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 1.7e-189 666.4 489 69.3
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 2.3e-189 666.0 493 68.2
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 2.9e-189 665.6 487 69.8
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 3.8e-189 665.2 488 68.2
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 2.5e-188 662.5 492 69.3
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 7.3e-188 661.0 492 69.1
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 2.1e-187 659.4 487 69.0
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.8e-187 659.1 491 69.5
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 2.8e-187 659.1 492 69.1
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 2.8e-187 659.1 495 69.1
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 4.7e-187 658.3 493 69.2
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 2.3e-186 656.0 494 67.4
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 3.0e-186 655.6 487 69.8
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 6.8e-186 654.4 488 68.0
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 5.7e-185 651.4 490 68.0
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 1.7e-184 649.8 488 68.4
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 3.7e-184 648.7 489 69.1
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 4.9e-184 648.3 494 68.8
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 1.4e-183 646.7 492 66.7
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 1.4e-183 646.7 492 66.7
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 1.8e-183 646.4 492 66.7
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 1.8e-183 646.4 492 66.7
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 1.8e-183 646.4 492 66.7
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 5.4e-183 644.8 494 68.2
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 7.0e-183 644.4 492 66.3
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.2e-182 643.7 493 66.7
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 3.5e-182 642.1 489 67.5
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.3e-181 640.2 488 67.6
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 2.3e-181 639.4 542 62.7
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 4.3e-180 635.2 476 69.1
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.8e-179 632.5 469 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 6.4e-176 621.3 525 62.3
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 8.6e-173 610.9 519 62.4
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 1.1e-172 610.5 481 65.7
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.4e-170 603.6 445 69.0
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 3.4e-169 599.0 510 62.7
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 8.3e-168 594.3 423 73.5
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 4.1e-167 592.0 490 62.4
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 7.1e-167 591.3 494 63.0
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 4.0e-146 522.3 522 55.6
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 6.2e-131 471.9 367 67.6
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 7.9e-126 454.9 292 76.4
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.3e-124 449.5 268 82.1
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 6.5e-120 435.3 342 67.5
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 1.4e-119 434.1 342 67.5
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 9.4e-111 404.8 313 69.3
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 1.6e-94 350.9 509 41.5
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 5.3e-90 335.9 231 71.0
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 3.5e-89 333.2 281 64.8
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 1.7e-88 330.9 395 49.9
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 4.1e-82 309.7 276 62.3
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 1.9e-79 300.8 327 53.8
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.0e-77 293.5 185 77.8
MCO03G244 Micromonas commoda HOM05D003223 ORTHO05D004865 6.8e-77 292.4 487 37.0
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 8.8e-77 292.0 535 37.2
Actinidia19950 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.5e-76 291.2 286 57.7
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 3.4e-76 290.0 247 65.2
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 3.5e-73 280.0 532 35.9
Duzib106G1784 Durio zibethinus HOM05D003223 ORTHO05D004865 1.8e-69 267.7 204 70.1
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 2.6e-68 263.8 259 56.4
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 1.6e-65 254.6 223 62.3
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 7.3e-63 245.7 170 72.9
PRCOL_00006825 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 6.0e-57 226.1 570 30.9
TAR633G0290 Trochodendron aralioides HOM05D003223 ORTHO05D004865 1.7e-56 224.6 212 59.4
MCO16G616 Micromonas commoda HOM05D003223 ORTHO05D004865 5.2e-53 213.0 586 30.2
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 9.2e-50 202.2 126 75.4
CDE04G2131 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 2.7e-49 200.7 126 82.5
AagrBONN_evm.TU.Sc2ySwM_290.3 Anthoceros agrestis HOM05D003223 ORTHO05D004865 3.6e-46 190.3 165 58.2
AagrBONN_evm.TU.Sc2ySwM_368.3036 Anthoceros agrestis HOM05D003223 ORTHO05D004865 4.0e-45 186.8 165 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1379 Anthoceros agrestis HOM05D003223 ORTHO05D004865 5.2e-45 186.4 165 57.6
Actinidia20597 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.3e-43 181.8 178 61.8
AagrBONN_evm.TU.Sc2ySwM_297.1 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.3e-40 171.8 129 62.8
AagrBONN_evm.TU.Sc2ySwM_368.2085 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.7e-40 171.4 153 55.6
AagrBONN_evm.TU.Sc2ySwM_94.8 Anthoceros agrestis HOM05D003223 ORTHO05D004865 8.6e-40 169.1 132 61.4
C09p07580 Brassica napus HOM05D002664 ORTHO05D002974 4.0e-37 160.2 108 64.8
AagrBONN_evm.TU.Sc2ySwM_368.601 Anthoceros agrestis HOM05D003223 ORTHO05D004865 4.6e-33 146.7 162 50.0
BcaNung05205 Brassica carinata HOM05D003223 ORTHO05D039635 8.7e-32 142.5 112 59.8
Actinidia19949 Actinidia chinensis HOM05D003223 ORTHO05D004865 8.4e-27 125.9 84 70.2
Psat0s7774g0080 Pisum sativum HOM05D003223 ORTHO05D037353 8.1e-22 109.4 179 39.7
Psat7g005320 Pisum sativum HOM05D003223 ORTHO05D037353 3.1e-21 107.5 162 40.7
Psat3g037800 Pisum sativum HOM05D003223 ORTHO05D004865 6.4e-19 99.8 68 73.5
Cfa024590 Carpinus fangiana HOM05D003223 ORTHO05D014810 1.0e-16 92.4 459 22.9
AagrBONN_evm.TU.Sc2ySwM_94.6 Anthoceros agrestis HOM05D003223 ORTHO05D004865 6.2e-14 83.2 58 67.2
Pp3c14_26389 Physcomitrium patens HOM05D003223 ORTHO05D014810 6.9e-13 79.7 367 21.5
Nitab4.5_0001903g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.6e-12 77.8 69 52.2
CAN.G1211.4 Capsicum annuum HOM05D003223 ORTHO05D004865 4.5e-12 77.0 142 40.1
Nitab4.5_0008354g0050 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.5e-12 77.0 50 66.0
BcaNung05206 Brassica carinata HOM05D003223 ORTHO05D039635 2.9e-11 74.3 86 45.3
SMO236G0068 Selaginella moellendorffii HOM05D003223 ORTHO05D014810 6.5e-11 73.2 163 29.4
Mapoly0155s0012 Marchantia polymorpha HOM05D003223 ORTHO05D014810 4.2e-10 70.5 457 21.2
AagrBONN_evm.TU.Sc2ySwM_228.1261 Anthoceros agrestis HOM05D003223 ORTHO05D014810 7.1e-10 69.7 447 21.3
Pp3c14_26380 Physcomitrium patens HOM05D003223 ORTHO05D014810 7.1e-10 69.7 387 20.7
DCAR_010872 Daucus carota HOM05D003223 ORTHO05D004865 9.3e-10 69.3 52 61.5
Lsat_1_v5_gn_8_130720 Lactuca sativa HOM05D003223 ORTHO05D233219 9.3e-10 69.3 108 41.7
SMO347G0424 Selaginella moellendorffii HOM05D003223 ORTHO05D014810 6.0e-09 66.6 296 22.0
Cre02.g093700 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D014810 1.9e-07 61.6 204 24.5
Mapoly0013s0191 Marchantia polymorpha HOM05D003223 ORTHO05D014810 7.4e-07 59.7 369 19.5
Haze_26231 Corylus avellana HOM05D000129 ORTHO05D000997 3.7e-06 57.4 135 31.1
Cre16.g681750 Chlamydomonas reinhardtii HOM05D000129 ORTHO05D000144 6.3e-06 56.6 111 28.8


User provided reference genes

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