Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 2.0e-56 223.4 263 100.0
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 5.2e-44 182.2 261 90.0
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 7.5e-43 178.3 261 88.5
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 1.1e-41 174.5 261 85.1
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 2.4e-41 173.3 261 83.1
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 3.2e-41 172.9 261 87.0
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 4.1e-41 172.6 261 86.6
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 5.4e-41 172.2 261 88.1
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 5.4e-41 172.2 261 88.1
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.2e-40 171.0 261 85.4
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 2.1e-40 170.2 261 88.5
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 2.7e-40 169.9 260 88.1
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 3.5e-40 169.5 261 87.0
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.6e-40 169.1 261 87.4
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.6e-40 169.1 261 87.0
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 4.6e-40 169.1 261 87.0
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 4.6e-40 169.1 260 88.5
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.0e-39 167.9 261 86.6
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 1.0e-39 167.9 261 87.0
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 1.3e-39 167.5 261 88.1
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 87.0
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.7e-39 167.2 260 85.4
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.7e-39 167.2 260 79.6
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 1.7e-39 167.2 261 78.9
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.7e-39 167.2 261 85.8
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 2.3e-39 166.8 261 86.6
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 2.3e-39 166.8 261 80.1
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 2.3e-39 166.8 260 86.9
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 3.0e-39 166.4 261 87.7
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 3.9e-39 166.0 260 86.9
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 5.1e-39 165.6 261 86.2
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 6.6e-39 165.2 261 81.2
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.5e-38 164.1 260 86.5
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.5e-38 164.1 261 80.8
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 86.2
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 87.0
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 4.3e-38 162.5 261 79.7
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 5.6e-38 162.2 261 86.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 85.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 78.9
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 9.5e-38 161.4 261 85.1
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.6e-37 160.6 261 85.4
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.6e-37 160.6 261 85.4
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.8e-37 159.8 261 39.1
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 82.8
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 83.5
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 4.7e-37 159.1 260 85.8
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 85.4
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 1.1e-36 157.9 261 85.1
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.4e-36 157.5 261 83.5
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 83.9
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.4e-36 156.8 261 85.1
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 85.1
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 83.9
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 4.0e-36 156.0 262 82.8
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 4.0e-36 156.0 262 82.8
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 4.0e-36 156.0 262 82.8
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 4.0e-36 156.0 260 84.6
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 6.8e-36 155.2 261 84.7
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 6.8e-36 155.2 261 84.7
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 6.8e-36 155.2 261 84.7
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 8.9e-36 154.8 262 82.4
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.5e-35 154.1 262 85.5
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 84.3
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 84.3
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.6e-35 153.3 261 84.3
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 2.6e-35 153.3 261 83.9
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 84.3
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 83.1
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 85.1
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 7.6e-35 151.8 261 83.5
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 7.6e-35 151.8 261 83.9
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 7.6e-35 151.8 261 79.7
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 3.8e-34 149.4 261 82.8
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 82.8
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 82.8
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 6.4e-34 148.7 261 83.5
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 8.4e-34 148.3 261 85.1
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 1.1e-33 147.9 261 84.7
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 1.1e-33 147.9 261 84.3
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 2.4e-33 146.7 284 65.8
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 2.4e-33 146.7 261 83.9
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 9.2e-33 144.8 257 82.9
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 2.7e-32 143.3 261 77.0
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 6.6e-31 138.7 261 83.9
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 8.7e-31 138.3 261 83.9
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.5e-30 137.5 261 80.8
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.6e-29 134.0 261 82.4
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 2.4e-28 130.2 268 59.7
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.4e-28 130.2 261 59.0
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.0e-27 127.1 268 81.3
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.6e-27 126.7 264 78.8
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.3e-26 124.4 249 83.1
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 3.8e-26 122.9 236 86.4
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.4e-26 122.1 251 82.9
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 8.4e-26 121.7 235 86.8
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 7.1e-25 118.6 299 49.2
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 2.7e-24 116.7 336 42.6
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 3.5e-24 116.3 271 72.3
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 4.6e-24 115.9 230 87.4
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.7e-23 114.0 63 85.7
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 3.9e-23 112.8 262 75.6
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 6.6e-23 112.1 65 81.5
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 8.7e-23 111.7 74 71.6
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 5.6e-22 109.0 74 70.3
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 9.6e-22 108.2 286 72.0
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 2.1e-21 107.1 74 66.2
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 2.8e-21 106.7 61 83.6
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.8e-21 106.7 73 69.9
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 3.6e-21 106.3 260 71.9
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 1.1e-20 104.8 61 78.7
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 4.0e-20 102.8 84 63.1
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 4.0e-20 102.8 95 55.8
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 5.3e-20 102.4 61 80.3
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 9.0e-20 101.7 61 77.0
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.5e-19 100.9 61 75.4
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 2.9e-18 96.7 74 59.5
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.4e-17 94.4 318 54.4
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.9e-17 94.0 65 69.2
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 4.2e-17 92.8 61 70.5
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 2.7e-16 90.1 64 60.9
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 1.8e-15 87.4 74 56.8
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 3.9e-15 86.3 207 89.4
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 1.4e-12 77.8 73 58.9
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 2.4e-12 77.0 338 51.2
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 4.0e-12 76.3 128 36.7
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 9.9e-11 71.6 260 70.0
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.3e-10 71.2 66 57.6
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.2e-08 64.7 60 43.3
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 2.7e-08 63.5 65 43.1
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 4.6e-08 62.8 60 45.0
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.6e-08 62.8 61 45.9
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 6.0e-08 62.4 68 39.7
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 6.0e-08 62.4 68 39.7
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 7.9e-08 62.0 84 40.5
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.0e-07 61.6 61 45.9
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 1.3e-07 61.2 60 45.0
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 3.9e-07 59.7 61 42.6
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 3.9e-07 59.7 61 42.6
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.1e-07 59.3 60 45.0
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.1e-07 59.3 60 45.0
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 5.1e-07 59.3 60 45.0
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 6.7e-07 58.9 60 41.7
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 6.7e-07 58.9 61 42.6
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 8.7e-07 58.5 68 39.7
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 8.7e-07 58.5 67 43.3
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 1.1e-06 58.2 68 39.7
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.5e-06 57.8 67 38.8
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 41.0
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 42.6
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 42.6
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 3.3e-06 56.6 60 41.7
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 3.3e-06 56.6 61 41.0
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 3.3e-06 56.6 69 42.0
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 3.3e-06 56.6 69 42.0
MCO14G433 Micromonas commoda HOM05D006395 ORTHO05D007894 3.3e-06 56.6 63 46.0
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 3.3e-06 56.6 42 59.5
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 3.3e-06 56.6 61 42.6
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 41.0
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 44.3
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 41.0
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 4.3e-06 56.2 57 43.9
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 42.6
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-06 56.2 31 83.9
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 41.0
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 5.6e-06 55.8 70 37.1
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 5.6e-06 55.8 70 37.1
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 7.4e-06 55.5 68 35.3
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 7.4e-06 55.5 67 37.3
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 7.4e-06 55.5 68 41.2


User provided reference genes

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