Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 4187.9 2176 100.0
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2000.7 2198 52.0
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 1953.3 2205 51.3
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 1854.3 2209 48.9
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1849.3 2196 48.3
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1835.1 2196 48.1
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 1832.4 2205 48.8
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1827.0 2216 48.6
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1815.4 2207 48.9
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 1775.0 2201 46.8
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 1773.8 2219 47.3
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 1769.2 2227 46.7
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 1762.7 2206 47.6
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 1760.7 2204 47.9
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 1753.4 2243 46.5
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 1749.2 2205 47.1
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 1748.0 2244 47.0
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 1736.5 2228 46.7
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 1736.1 2201 46.8
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 1729.5 2288 46.3
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 1718.7 2205 46.3
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 1709.9 2201 45.3
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1702.6 2209 45.5
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1694.9 2242 44.8
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1689.9 2222 45.5
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1682.9 2220 45.4
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1679.5 2228 45.4
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1667.9 2197 45.6
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1662.5 2208 44.8
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1645.6 2195 44.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1639.4 2331 43.9
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1636.7 2206 43.9
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1629.4 2193 43.9
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1629.0 2191 45.0
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1625.1 2228 44.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1618.6 2185 43.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1616.7 2206 44.6
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1611.3 2214 44.1
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1610.1 2223 44.5
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1609.3 2199 43.7
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1608.6 2197 43.2
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1607.8 2209 44.4
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1605.1 2201 43.5
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1600.1 2226 44.2
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1598.2 2226 44.2
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1595.1 2207 44.4
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1590.5 2207 44.4
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1588.9 2211 44.1
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1587.8 2194 42.7
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1587.8 2216 43.4
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1585.9 2200 43.5
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1576.6 2200 44.1
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1570.8 2201 43.1
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1561.2 2207 43.9
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1560.0 2209 43.6
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1559.7 2205 43.1
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1558.9 2213 43.3
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1557.7 2205 43.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1552.0 2199 42.9
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1546.2 2205 42.4
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1543.9 2192 43.9
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1540.4 2275 42.6
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1536.2 2209 41.7
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1526.1 2208 42.3
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1504.2 1995 45.6
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1489.2 2262 41.0
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1485.3 2278 41.1
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1473.8 2272 41.3
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1469.1 2273 40.9
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1458.0 2270 41.0
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1452.6 2187 41.7
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1448.7 2319 40.2
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1446.4 2221 41.2
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1446.0 2199 41.9
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1443.7 2269 40.9
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1432.9 2273 40.5
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1426.4 2197 41.1
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1423.7 2265 40.1
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1418.3 2274 40.3
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1411.4 2281 39.7
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1348.2 1981 41.0
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1295.0 1829 44.0
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1287.7 2364 37.7
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1219.1 1945 40.6
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1195.6 1796 42.1
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1195.3 1902 41.2
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1099.0 1393 46.9
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1088.2 1868 38.7
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1085.9 1874 38.6
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1077.8 1725 40.1
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 3.0e-311 1072.8 1884 37.6
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 6.0e-311 1072.0 1884 38.3
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.8e-310 1070.5 1551 42.5
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 1.2e-308 1064.3 1880 37.8
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 3.6e-292 1009.6 1413 43.2
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 3.0e-278 963.4 1478 40.9
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.8e-276 956.1 2227 32.7
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 2.0e-274 950.7 2255 32.4
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.4e-274 949.9 2238 32.2
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 5.3e-267 926.0 1070 49.3
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-251 874.4 1435 40.6
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.1e-248 865.1 1205 43.2
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 4.8e-244 849.7 980 49.8
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 5.9e-242 842.8 2204 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 1.6e-239 834.7 2137 30.3
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 5.3e-235 819.7 1178 42.4
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.5e-226 790.0 1168 41.1
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.0e-225 786.6 816 53.9
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.6e-207 728.4 725 54.6
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.0e-205 721.5 850 49.5
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.7e-204 717.2 847 50.2
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 2.0e-202 711.4 2341 27.9
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.7e-177 626.3 800 48.2
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.3e-153 549.3 845 40.7
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.3e-145 521.9 640 47.2
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 1.6e-143 515.8 636 45.6
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 7.9e-138 496.9 636 45.3
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 8.8e-137 493.4 650 42.6
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-134 486.1 703 44.7
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.0e-133 482.3 508 50.6
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.2e-130 473.0 568 46.7
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.7e-122 444.5 409 59.7
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.3e-111 407.5 610 42.5
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.3e-105 389.0 770 36.1
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.8e-105 387.1 403 55.8
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.5e-99 369.0 657 38.7
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 2.3e-92 345.9 360 50.8
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 4.0e-89 335.1 398 46.0
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 2.2e-87 329.3 390 47.2
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.3e-84 319.3 312 53.2
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.5e-83 313.9 486 42.8
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 4.4e-80 305.1 873 31.3
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 3.7e-79 302.0 266 60.2
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 2.1e-74 286.2 310 50.0
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.6e-72 279.3 391 43.2
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 9.2e-70 270.8 232 62.5
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 8.4e-63 247.7 220 60.9
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.7e-60 237.7 340 42.4
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 7.3e-59 234.6 994 24.9
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.4e-57 229.6 197 57.9
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.4e-56 225.7 363 37.5
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 6.7e-52 211.5 402 37.3
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 1.9e-51 209.9 286 40.9
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 6.2e-50 204.9 279 47.0
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 6.2e-50 204.9 223 50.7
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 6.2e-50 204.9 223 50.7
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 4.6e-45 188.7 558 28.7
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 3.3e-43 182.6 127 72.4
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 1.3e-42 180.6 111 82.0
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 5.5e-38 165.2 144 62.5
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.2e-37 164.1 397 33.0
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.7e-35 155.2 227 38.3
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.2e-34 153.3 94 84.0
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 6.3e-34 151.8 225 40.4
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 3.1e-33 149.4 608 26.5
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 2.3e-28 133.3 338 31.7
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 1.3e-26 127.5 180 40.6
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 6.3e-26 125.2 180 40.0
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.1e-25 124.4 227 36.1
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 2.9e-23 116.3 907 21.7
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 1.8e-20 107.1 151 43.0
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 5.3e-17 95.5 223 33.2
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.7e-15 90.5 166 38.0
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.1e-14 87.8 206 33.5
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 9.4e-14 84.7 147 38.1
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 2.1e-13 83.6 50 74.0
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 3.6e-13 82.8 132 38.6
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 6.7e-12 78.6 58 67.2
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 2.6e-11 76.6 215 30.2
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 4.1e-09 69.3 40 75.0
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 4.1e-09 69.3 40 75.0
SMO142G0017 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.6e-08 67.4 216 28.2
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 3.5e-08 66.2 153 33.3
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 5.9e-08 65.5 310 28.1
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 8.5e-07 61.6 54 55.6
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 5.5e-06 58.9 137 30.7


User provided reference genes

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