Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 7.2e-217 756.9 371 100.0
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 5.0e-133 478.4 319 69.3
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 8.5e-133 477.6 332 65.4
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.5e-132 476.1 364 61.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 9.7e-129 464.2 318 66.0
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.1e-127 460.7 319 66.5
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.1e-127 460.7 321 65.7
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.6e-126 456.8 335 65.4
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 4.5e-126 455.3 318 64.8
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 4.5e-126 455.3 335 63.6
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 7.7e-126 454.5 321 64.5
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 7.7e-126 454.5 317 64.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 2.9e-125 452.6 331 64.4
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 2.9e-125 452.6 336 63.1
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 8.5e-125 451.1 332 62.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 8.5e-125 451.1 319 63.9
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.5e-124 450.3 322 65.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 1.5e-124 450.3 333 63.1
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 2.5e-124 449.5 317 64.4
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.5e-124 448.4 342 61.4
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.1e-123 446.4 322 64.6
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.7e-123 445.3 317 64.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 8.0e-123 444.5 321 64.2
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 8.0e-123 444.5 321 64.5
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 8.0e-123 444.5 319 63.9
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 8.0e-123 444.5 331 63.7
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.3e-122 443.0 317 63.4
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.1e-121 440.7 332 62.0
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.0e-121 439.9 320 62.5
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 2.6e-121 439.5 335 60.6
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.6e-121 439.5 345 59.7
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.3e-121 439.1 330 62.1
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 5.7e-121 438.3 332 62.7
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 5.7e-121 438.3 331 61.9
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 7.5e-121 438.0 336 61.9
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 9.7e-121 437.6 337 61.1
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 9.7e-121 437.6 331 61.9
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.3e-120 437.2 353 60.9
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.3e-120 437.2 381 55.1
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.7e-120 436.8 320 64.7
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.2e-120 436.4 316 63.6
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 2.2e-120 436.4 330 61.2
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 2.8e-120 436.0 319 64.6
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 4.8e-120 435.3 317 61.8
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.3e-120 434.9 319 63.9
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.1e-119 434.1 340 60.0
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.1e-119 434.1 338 61.2
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.4e-119 433.7 325 61.5
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 1.4e-119 433.7 335 61.2
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.8e-119 433.3 319 64.3
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.4e-119 433.0 320 63.8
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 3.1e-119 432.6 371 58.8
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.1e-119 432.2 331 60.4
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.1e-119 432.2 331 60.4
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.1e-119 432.2 324 63.6
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.1e-119 432.2 319 63.9
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 4.1e-119 432.2 336 61.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.3e-119 431.8 357 57.7
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 5.3e-119 431.8 320 63.4
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.7e-118 429.5 340 60.3
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 2.7e-118 429.5 320 63.1
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 5.9e-118 428.3 332 61.7
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 5.9e-118 428.3 332 61.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 7.7e-118 427.9 334 60.8
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.7e-117 426.8 330 60.9
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 6.5e-117 424.9 320 62.8
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 8.5e-117 424.5 313 64.2
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.9e-116 423.3 323 60.4
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.9e-116 423.3 319 62.1
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.5e-116 422.9 334 60.5
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.2e-116 422.5 302 63.6
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.2e-115 420.6 335 60.9
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 3.6e-115 419.1 348 56.0
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 4.7e-115 418.7 296 65.5
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 6.1e-115 418.3 349 57.0
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 1.4e-114 417.2 340 60.0
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 2.3e-114 416.4 338 59.8
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.4e-113 412.5 334 59.3
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 7.5e-113 411.4 331 60.4
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 9.8e-113 411.0 280 67.5
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.8e-112 408.7 299 63.5
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.8e-111 406.8 322 59.3
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 2.4e-111 406.4 338 58.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.4e-111 406.4 336 57.4
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 4.5e-110 402.1 325 58.5
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 6.5e-109 398.3 306 63.7
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.1e-108 397.5 336 58.0
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.5e-108 397.1 333 56.8
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 9.4e-108 394.4 272 66.9
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 9.4e-108 394.4 282 65.2
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.6e-107 392.5 333 56.2
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.7e-107 392.1 348 56.6
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 6.1e-107 391.7 333 55.9
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 6.1e-107 391.7 310 59.7
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.0e-106 391.0 283 64.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 4.0e-106 389.0 318 60.1
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.3e-104 384.0 329 58.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.4e-103 379.8 314 58.9
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 3.1e-103 379.4 370 52.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 9.2e-103 377.9 338 56.8
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 5.9e-102 375.2 323 56.3
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.3e-100 369.0 298 58.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 5.7e-97 358.6 330 53.0
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 7.0e-95 351.7 305 54.4
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 8.6e-93 344.7 292 57.9
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 5.2e-90 335.5 295 54.9
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 5.0e-85 318.9 299 51.8
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 7.3e-84 315.1 336 47.6
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.1e-82 311.2 337 46.9
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 5.8e-81 305.4 303 48.5
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 5.8e-81 305.4 299 52.2
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 3.4e-73 279.6 241 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 4.9e-72 275.8 218 58.7
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.3e-69 267.7 302 43.4
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 6.9e-66 255.4 288 41.7
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.2e-65 254.6 213 55.9
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 2.6e-65 253.4 293 43.3
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.7e-61 238.4 233 50.6
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 1.1e-58 231.5 297 42.1
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 1.8e-45 187.6 129 65.1
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 3.9e-37 159.8 147 53.1
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 3.8e-32 143.3 85 74.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.2e-30 138.3 90 65.6
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.1e-30 137.5 211 37.4
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.2e-24 117.5 70 72.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 8.2e-11 72.4 42 71.4
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 3.1e-10 70.5 70 52.9
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 2.5e-07 60.8 59 45.8


User provided reference genes

Program Settings