Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 0.0e+00 1104.0 534 100.0
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.0e-227 793.5 531 72.1
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.9e-226 789.3 529 71.5
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.3e-222 776.5 537 70.2
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.3e-222 776.5 535 70.1
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.1e-221 773.5 541 69.7
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.8e-221 772.7 536 69.8
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 9.1e-221 770.4 488 74.8
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.6e-220 769.6 555 69.0
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.7e-220 768.8 464 76.7
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 4.5e-220 768.1 484 74.8
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 5.9e-220 767.7 469 75.7
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.3e-219 766.5 465 75.9
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 6.5e-219 764.2 476 75.6
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 1.1e-218 763.5 476 74.4
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 1.1e-218 763.5 474 75.5
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.1e-218 763.5 511 71.0
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.9e-218 762.7 476 75.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 9.4e-218 760.4 461 75.9
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.6e-217 759.6 487 73.9
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 3.6e-217 758.4 514 70.6
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 3.6e-217 758.4 530 70.4
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 3.6e-217 758.4 525 69.3
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 3.6e-217 758.4 525 69.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 8.0e-217 757.3 534 68.4
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 5.2e-216 754.6 460 76.3
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 6.8e-216 754.2 461 75.3
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 6.8e-216 754.2 482 73.0
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 8.8e-216 753.8 482 73.2
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.5e-215 753.1 461 75.9
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.5e-215 753.1 464 74.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.0e-215 752.7 534 68.5
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.4e-215 751.9 464 75.4
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 3.4e-215 751.9 464 74.4
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.4e-215 751.5 534 68.7
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.4e-215 751.5 534 68.7
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.5e-215 750.7 476 73.7
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.3e-214 750.0 483 72.9
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.3e-214 750.0 539 67.7
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.7e-214 749.6 534 67.8
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.2e-214 749.2 465 74.0
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 2.2e-214 749.2 534 68.4
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.2e-214 749.2 482 73.0
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 3.7e-214 748.4 461 75.3
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 4.8e-214 748.0 467 73.7
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 4.8e-214 748.0 486 72.0
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 8.3e-214 747.3 514 69.6
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 8.3e-214 747.3 534 68.2
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 8.3e-214 747.3 463 74.1
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.4e-213 746.5 467 74.1
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.1e-213 745.0 464 75.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.2e-212 743.4 465 73.8
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.2e-212 743.4 465 74.8
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.7e-212 742.3 523 69.0
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 5.9e-212 741.1 464 75.6
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 7.7e-212 740.7 467 73.0
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.0e-211 740.3 467 73.4
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.0e-211 740.3 476 73.3
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.0e-211 740.3 512 70.1
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 1.3e-211 740.0 566 64.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.7e-211 739.6 538 66.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.8e-211 738.4 476 72.7
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 5.0e-211 738.0 532 66.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.3e-210 735.3 498 70.7
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 3.3e-210 735.3 489 70.1
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 7.2e-210 734.2 530 67.2
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 2.1e-209 732.6 536 68.3
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.8e-209 732.3 588 61.6
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 3.6e-209 731.9 510 68.6
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 6.1e-209 731.1 466 71.5
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 8.9e-208 727.2 535 66.7
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.2e-207 726.9 539 66.4
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 2.0e-207 726.1 538 65.8
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.0e-207 726.1 463 72.8
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 4.4e-207 724.9 481 71.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 9.8e-207 723.8 611 59.9
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 9.8e-207 723.8 508 67.9
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 9.8e-207 723.8 465 72.0
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.7e-206 723.0 461 73.5
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 2.2e-206 722.6 461 72.9
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 3.7e-206 721.8 469 70.4
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-206 721.5 527 66.4
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 6.3e-206 721.1 529 66.2
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 8.3e-206 720.7 528 66.3
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 2.0e-204 716.1 527 67.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 3.5e-204 715.3 527 67.0
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 5.9e-204 714.5 484 68.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 5.9e-204 714.5 509 69.2
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.0e-203 713.8 459 73.0
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.0e-203 713.8 526 66.0
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.3e-203 712.6 465 71.2
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.1e-202 710.3 534 65.2
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.1e-201 706.1 519 67.4
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.7e-198 696.4 436 73.6
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 6.4e-198 694.5 442 74.0
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.1e-197 693.7 459 70.8
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 9.2e-197 690.6 459 70.6
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 3.9e-195 685.3 464 70.9
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.5e-194 682.6 421 74.6
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.6e-193 678.7 464 69.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.8e-192 676.4 527 63.9
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 1.5e-191 673.3 527 62.4
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.6e-191 672.5 421 73.9
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 3.5e-188 662.1 458 67.5
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 7.3e-186 654.4 459 70.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 3.6e-185 652.1 442 69.9
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.8e-184 649.8 480 64.2
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.7e-182 643.3 450 66.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 3.5e-180 635.6 464 64.2
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.5e-178 630.2 421 70.8
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.6e-177 625.5 462 63.4
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.4e-176 623.6 464 63.8
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 8.4e-174 614.4 464 62.9
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.3e-171 606.3 463 63.7
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 5.2e-168 595.1 464 63.1
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.1e-165 587.4 459 62.7
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.5e-162 577.0 363 74.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 5.6e-162 575.1 471 60.1
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.0e-160 568.9 456 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.9e-157 560.1 485 57.1
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 6.0e-156 555.1 479 58.2
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.5e-135 487.3 390 63.3
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.4e-133 480.7 355 66.5
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.2e-129 466.8 501 50.3
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.8e-120 437.2 333 66.1
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 5.0e-118 429.1 418 51.4
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 4.8e-113 412.5 254 73.6
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 6.1e-108 395.6 316 62.3
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-99 367.9 261 65.5
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.3e-94 351.3 214 71.5
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.4e-91 341.3 326 56.4
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-89 334.0 255 61.6
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 3.5e-87 326.6 199 77.4
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.6e-79 301.2 242 59.5
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.9e-61 241.1 208 62.0
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 7.1e-56 222.6 162 64.8
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 4.3e-53 213.4 144 69.4
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 7.6e-50 202.6 103 99.0
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.6e-42 177.6 113 69.0
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 7.9e-39 166.0 91 78.0
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.0e-38 165.6 101 79.2
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.0e-38 165.6 182 50.5
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 3.1e-35 154.1 178 49.4
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 6.5e-33 146.4 115 61.7
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 9.0e-27 125.9 95 63.2
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 3.7e-20 104.0 118 53.4
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.8e-14 85.1 58 56.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.8e-11 75.1 58 67.2
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.4e-11 74.7 48 75.0
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.4e-11 74.7 48 75.0
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 9.1e-11 72.8 56 62.5
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 5.0e-09 67.0 65 60.0
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 3.6e-07 60.8 64 53.1


User provided reference genes

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