Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 4.2e-68 261.5 163 100.0
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 5.2e-42 174.9 157 60.5
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 8.8e-42 174.1 157 65.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 7.5e-41 171.0 126 69.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.3e-40 170.2 127 70.9
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.8e-40 168.3 124 70.2
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 6.3e-40 167.9 126 70.6
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 6.3e-40 167.9 126 70.6
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.3e-40 167.9 162 63.6
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.3e-40 167.5 122 72.1
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.3e-40 167.5 122 72.1
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.1e-39 167.2 123 70.7
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.4e-39 166.8 124 69.4
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.4e-39 166.8 128 66.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.4e-39 166.8 123 69.9
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.8e-39 166.4 128 68.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.8e-39 166.4 128 68.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.8e-39 166.4 125 69.6
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.4e-39 166.0 121 71.1
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 7.0e-39 164.5 123 69.9
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 7.0e-39 164.5 122 70.5
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 9.1e-39 164.1 124 67.7
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 9.1e-39 164.1 122 71.3
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 9.1e-39 164.1 123 69.1
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.2e-38 163.7 123 69.1
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.2e-38 163.7 124 69.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.2e-38 163.7 130 65.4
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 69.4
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 69.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-38 162.9 120 70.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 70.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.0e-38 162.9 123 69.1
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.5e-38 162.2 127 65.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.5e-38 162.2 123 67.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.5e-38 162.2 123 68.3
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 3.5e-38 162.2 124 69.4
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 4.5e-38 161.8 123 67.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 4.5e-38 161.8 157 70.1
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 5.9e-38 161.4 121 67.8
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 5.9e-38 161.4 123 67.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 7.7e-38 161.0 125 66.4
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 7.7e-38 161.0 122 68.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.3e-37 160.2 124 66.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-37 160.2 124 67.7
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.7e-37 159.8 125 65.6
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.7e-37 159.8 124 68.5
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 1.7e-37 159.8 129 63.6
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.2e-37 159.5 124 66.9
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.9e-37 159.1 121 69.4
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.9e-37 159.1 126 65.1
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.9e-37 159.1 121 67.8
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.8e-37 158.7 121 69.4
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.8e-37 158.7 124 66.1
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.8e-37 158.7 129 66.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.8e-37 158.7 126 68.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.8e-37 158.7 123 66.7
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.8e-37 158.7 123 66.7
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.8e-37 158.7 123 66.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 5.0e-37 158.3 124 65.3
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.0e-37 158.3 123 65.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.0e-37 158.3 123 65.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.0e-37 158.3 123 65.0
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 5.0e-37 158.3 123 65.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 5.0e-37 158.3 122 67.2
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 5.0e-37 158.3 122 67.2
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.5e-37 157.9 123 65.0
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 6.5e-37 157.9 128 64.8
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 6.5e-37 157.9 124 66.1
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 6.5e-37 157.9 124 66.1
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.5e-37 157.9 121 69.4
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 8.5e-37 157.5 124 67.7
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 8.5e-37 157.5 124 66.1
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.1e-36 157.1 123 65.0
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.1e-36 157.1 123 65.0
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.1e-36 157.1 121 67.8
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.1e-36 157.1 122 66.4
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.5e-36 156.8 143 60.8
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.5e-36 156.8 121 67.8
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.5e-36 156.8 126 64.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.5e-36 156.0 123 65.0
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 2.5e-36 156.0 120 65.8
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.2e-36 155.6 122 68.9
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 3.2e-36 155.6 123 68.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 3.2e-36 155.6 121 67.8
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.2e-36 155.2 123 64.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.5e-36 154.8 123 65.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 7.2e-36 154.5 129 65.9
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.6e-35 153.3 126 63.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.1e-35 152.9 123 66.7
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.7e-35 152.5 126 65.1
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.7e-35 151.8 120 67.5
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.7e-35 151.8 126 65.1
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 6.1e-35 151.4 122 63.9
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 6.1e-35 151.4 123 62.6
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 6.1e-35 151.4 126 64.3
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 8.0e-35 151.0 121 62.8
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.4e-34 150.2 132 61.4
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.3e-34 149.4 116 65.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.0e-34 149.1 124 63.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.2e-34 148.3 122 62.3
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 6.8e-34 147.9 124 59.7
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.2e-33 147.1 159 62.9
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.2e-33 147.1 120 64.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.0e-33 146.4 120 65.0
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.0e-33 146.4 123 65.0
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.0e-33 146.4 157 53.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 2.6e-33 146.0 122 61.5
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.6e-33 146.0 124 58.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 4.4e-33 145.2 123 61.8
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 4.4e-33 145.2 153 65.4
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.8e-33 144.1 153 64.7
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-32 142.9 120 60.8
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-32 142.9 119 61.3
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.8e-31 139.8 123 59.3
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.4e-31 139.4 123 59.3
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 7.0e-31 137.9 123 61.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.2e-28 128.6 122 57.4
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 5.5e-28 128.3 124 53.2
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 7.2e-28 127.9 123 61.0
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.1e-27 126.3 197 41.6
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 2.8e-27 125.9 105 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 4.7e-27 125.2 121 55.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 8.0e-27 124.4 206 39.8
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-26 123.6 99 65.7
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 4.0e-26 122.1 100 63.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 3.4e-25 119.0 102 59.8
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 3.4e-25 119.0 128 50.8
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.8e-25 117.5 96 64.6
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.9e-24 115.2 88 68.2
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 6.1e-19 98.2 95 57.9
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.7e-16 89.0 96 50.0
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.7e-16 89.0 96 50.0
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 4.1e-15 85.5 94 48.9
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.6e-12 75.1 95 48.4
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.1e-11 73.2 64 56.2
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.8e-11 72.8 101 43.6
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.6e-11 72.4 54 61.1
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.2e-08 63.2 71 54.9
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 4.9e-08 62.0 121 39.7
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 6.4e-08 61.6 71 53.5


User provided reference genes

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