Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.4e-33 143.7 69 100.0
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.3e-30 133.3 69 94.2
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.6e-29 131.0 69 91.3
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.1e-24 115.2 69 78.3
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.1e-24 115.2 69 78.3
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.0e-23 112.8 69 76.8
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-23 111.7 69 76.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-23 111.7 69 76.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-23 111.7 69 76.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-23 111.7 69 76.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.3e-23 111.7 68 76.5
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.3e-23 111.7 69 76.8
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.0e-23 111.3 66 77.3
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.0e-23 111.3 68 77.9
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.0e-23 111.3 66 77.3
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 6.6e-23 110.2 66 75.8
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.6e-23 110.2 66 77.3
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.6e-23 110.2 66 77.3
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-22 109.4 69 75.4
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.1e-22 109.4 65 76.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.1e-22 109.4 68 75.0
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.1e-22 109.4 68 75.0
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.1e-22 109.4 65 76.9
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.1e-22 109.4 65 76.9
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.5e-22 109.0 66 77.3
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 1.5e-22 109.0 69 75.4
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.9e-22 108.6 69 73.9
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 1.9e-22 108.6 64 79.7
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 2.5e-22 108.2 66 75.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 3.3e-22 107.8 65 75.4
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 4.3e-22 107.5 66 75.8
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.3e-22 107.5 68 76.5
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.3e-22 107.5 68 76.5
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.3e-22 107.5 68 76.5
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 75.0
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 75.0
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 75.0
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 75.0
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 73.5
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 73.5
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 5.6e-22 107.1 68 73.5
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 7.3e-22 106.7 69 72.5
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.6e-21 105.5 67 73.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-21 104.8 68 73.5
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.8e-21 104.8 68 73.5
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 2.8e-21 104.8 63 76.2
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 2.8e-21 104.8 63 76.2
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 6.2e-21 103.6 69 69.6
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 6.2e-21 103.6 69 73.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.1e-20 102.8 65 75.4
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.4e-20 101.7 60 81.7
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-20 101.3 66 74.2
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.1e-20 101.3 66 72.7
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 8.9e-20 99.8 65 72.3
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 8.9e-20 99.8 69 71.0
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.0e-19 98.6 60 76.7
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.6e-19 98.2 61 75.4
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 2.6e-19 98.2 67 71.6
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.4e-19 97.8 61 73.8
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 5.8e-19 97.1 64 70.3
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.9e-19 96.3 65 70.8
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-18 95.9 67 68.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.3e-18 95.9 55 80.0
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.8e-18 94.4 64 70.3
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.4e-17 92.4 64 70.3
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 2.4e-17 91.7 64 68.8
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.4e-17 91.7 64 68.8
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.1e-17 90.1 64 67.2
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.1e-17 90.1 64 67.2
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.6e-16 89.0 62 66.1
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 7.8e-16 86.7 55 72.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.3e-15 85.1 56 71.4
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.9e-15 84.3 52 76.9
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 2.5e-14 81.6 60 65.0
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 7.3e-14 80.1 64 60.9
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 8.1e-13 76.6 68 58.8
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.8e-12 75.5 49 73.5
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.8e-12 75.5 48 72.9
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.9e-12 73.6 55 61.8
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.9e-12 73.6 55 61.8
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.4e-09 65.9 36 83.3
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.4e-09 65.9 52 61.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 3.2e-09 64.7 42 71.4
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.2e-08 62.8 54 55.6
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.7e-08 61.6 54 55.6
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 7.9e-08 60.1 42 64.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 7.9e-08 60.1 37 75.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.3e-07 59.3 52 57.7
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.9e-06 55.5 39 66.7
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 2.5e-06 55.1 36 63.9
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 9.6e-06 53.1 32 78.1


User provided reference genes

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