Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 2.3e-110 402.1 192 100.0
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.0e-74 281.2 193 66.8
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 5.1e-73 278.1 188 65.4
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.4e-70 270.0 186 65.6
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 2.4e-70 269.2 190 66.8
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 6.9e-70 267.7 185 67.6
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.7e-68 263.1 189 62.4
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.4e-67 260.0 190 61.6
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 4.2e-67 258.5 181 61.9
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-65 253.4 178 64.0
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 2.3e-65 252.7 187 64.7
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 5.1e-65 251.5 179 69.3
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 6.7e-65 251.1 192 62.5
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 3.3e-64 248.8 187 63.6
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 4.3e-64 248.4 184 62.0
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 5.7e-64 248.1 191 63.4
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 2.2e-63 246.1 195 64.6
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 2.8e-63 245.7 192 63.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 3.7e-63 245.4 188 62.8
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 3.7e-63 245.4 188 61.7
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 4.8e-63 245.0 192 62.0
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 6.3e-63 244.6 192 60.4
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 6.3e-63 244.6 187 63.1
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 6.3e-63 244.6 185 62.7
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 6.3e-63 244.6 188 64.4
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 6.3e-63 244.6 192 62.0
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 8.2e-63 244.2 186 61.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.1e-62 243.8 188 61.2
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.1e-62 243.8 190 60.0
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.1e-62 243.8 189 58.2
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.1e-62 243.8 188 63.3
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.1e-62 243.8 188 62.2
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.4e-62 243.4 187 62.0
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 1.4e-62 243.4 187 65.2
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 1.4e-62 243.4 188 62.8
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.4e-62 243.4 193 59.1
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.4e-62 243.4 194 59.3
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.8e-62 243.0 188 62.2
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.8e-62 243.0 188 63.3
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 2.4e-62 242.7 188 63.3
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.4e-62 242.7 187 61.5
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 3.1e-62 242.3 188 62.2
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 3.1e-62 242.3 188 61.2
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 4.1e-62 241.9 187 64.7
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 4.1e-62 241.9 196 59.7
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 5.3e-62 241.5 188 62.2
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 5.3e-62 241.5 187 62.6
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 5.3e-62 241.5 190 58.4
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 6.9e-62 241.1 191 60.7
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 9.0e-62 240.7 187 62.0
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-61 240.4 189 60.3
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-61 240.4 189 60.3
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.2e-61 240.4 187 59.4
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 1.5e-61 240.0 189 61.4
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.5e-61 240.0 188 61.2
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.0e-61 239.6 187 62.6
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 2.0e-61 239.6 188 60.6
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 2.6e-61 239.2 187 62.6
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.6e-61 239.2 193 59.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.4e-61 238.8 188 61.2
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.4e-61 238.8 187 61.0
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 4.5e-61 238.4 189 62.4
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 4.5e-61 238.4 190 59.5
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 5.9e-61 238.0 186 60.8
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 1.0e-60 237.3 187 62.0
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 1.0e-60 237.3 191 60.2
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 1.0e-60 237.3 187 63.1
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 1.3e-60 236.9 193 57.5
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.7e-60 236.5 187 62.0
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.7e-60 236.5 187 61.0
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.7e-60 236.5 187 62.6
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.7e-60 236.5 187 61.0
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.9e-60 235.7 187 60.4
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 2.9e-60 235.7 187 61.5
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 2.9e-60 235.7 187 61.5
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.9e-60 235.7 187 60.4
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.9e-60 235.7 187 60.4
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 2.9e-60 235.7 182 59.9
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 3.8e-60 235.3 187 60.4
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 5.0e-60 235.0 189 60.3
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 5.0e-60 235.0 187 61.0
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 6.5e-60 234.6 189 60.3
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 6.5e-60 234.6 189 59.3
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 6.5e-60 234.6 189 59.3
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 8.5e-60 234.2 182 61.0
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 8.5e-60 234.2 185 58.9
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.4e-59 233.4 194 56.7
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.9e-59 233.0 188 61.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 2.5e-59 232.6 183 61.7
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 3.2e-59 232.3 187 60.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.2e-59 232.3 188 60.6
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 4.2e-59 231.9 189 59.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.5e-59 231.5 187 59.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.2e-59 231.1 189 58.7
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 9.4e-59 230.7 191 57.6
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 9.4e-59 230.7 182 57.7
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.8e-57 226.5 183 60.7
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 2.3e-57 226.1 185 57.3
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 2.3e-57 226.1 180 59.4
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 3.9e-57 225.3 233 50.2
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.1e-56 223.8 202 56.4
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.1e-56 223.8 189 56.1
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.5e-56 223.4 180 53.3
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.7e-55 219.9 214 53.3
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 1.4e-54 216.9 187 55.1
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.1e-54 215.7 189 55.6
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.1e-54 215.7 189 55.6
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.5e-53 213.4 186 53.8
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 5.0e-52 208.4 188 53.2
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 9.4e-51 204.1 173 55.5
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.6e-50 203.4 188 53.2
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.0e-48 196.4 150 62.7
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.4e-48 195.3 149 61.7
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 5.7e-48 194.9 191 51.3
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.7e-48 194.9 165 58.8
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 2.8e-47 192.6 195 51.3
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 3.7e-47 192.2 193 49.2
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.4e-43 180.3 137 62.0
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 3.2e-43 179.1 147 58.5
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.2e-31 137.9 88 65.9
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.5e-27 127.1 99 60.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.6e-26 123.6 119 49.6
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.8e-25 120.2 78 66.7
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 2.6e-24 116.3 113 54.9
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 9.1e-22 107.8 110 50.0
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.9e-12 76.3 95 44.2
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 4.4e-08 62.4 98 39.8
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 9.8e-08 61.2 189 28.0


User provided reference genes

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