Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.4e-32 141.0 67 100.0
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.1e-22 106.7 67 73.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 6.0e-21 103.6 66 69.7
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 7.9e-21 103.2 64 70.3
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 7.9e-21 103.2 64 70.3
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 7.9e-21 103.2 64 70.3
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 7.9e-21 103.2 64 70.3
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 7.9e-21 103.2 66 69.7
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.0e-20 102.8 64 70.3
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.0e-20 102.8 64 70.3
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.0e-20 102.8 64 70.3
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.0e-20 102.8 66 69.7
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.0e-20 102.8 66 69.7
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.0e-20 102.8 66 69.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.0e-20 102.8 65 70.8
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.0e-20 102.8 65 70.8
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.8e-20 102.1 66 69.7
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.8e-20 102.1 66 69.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 3.9e-20 100.9 66 68.2
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 3.9e-20 100.9 66 69.7
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 3.9e-20 100.9 66 68.2
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 66 68.2
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 66 68.2
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 66 68.2
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 66 68.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 64 68.8
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 5.1e-20 100.5 66 68.2
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 5.1e-20 100.5 66 68.2
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 5.1e-20 100.5 66 68.2
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.7e-20 100.1 64 68.8
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 8.7e-20 99.8 66 68.2
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 8.7e-20 99.8 65 67.7
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-19 99.4 64 68.8
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-19 99.4 66 68.2
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-19 99.4 66 68.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-19 99.0 66 68.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-19 99.0 66 68.2
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-19 99.0 67 68.7
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.5e-19 99.0 63 69.8
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.5e-19 99.0 63 69.8
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.9e-19 98.6 61 70.5
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-19 98.2 60 71.7
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 2.5e-19 98.2 65 69.2
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 4.3e-19 97.4 66 65.2
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-19 97.4 66 66.7
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 4.3e-19 97.4 63 71.4
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.4e-19 96.7 67 68.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 7.4e-19 96.7 63 68.3
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.6e-18 95.5 66 66.7
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.6e-18 94.4 59 71.2
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 6.2e-18 93.6 64 64.1
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 6.2e-18 93.6 64 64.1
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 6.2e-18 93.6 67 65.7
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 6.2e-18 93.6 66 65.2
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.1e-18 93.2 67 68.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-17 92.8 65 67.7
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-17 92.8 65 63.1
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.4e-17 92.4 66 65.2
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.4e-17 92.4 66 65.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 3.1e-17 91.3 64 62.5
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 3.1e-17 91.3 64 62.5
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 3.1e-17 91.3 64 62.5
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-16 89.0 57 66.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 7.6e-16 86.7 56 69.6
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 7.6e-16 86.7 59 66.1
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 9.9e-16 86.3 66 57.6
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-15 85.9 66 60.6
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.7e-15 85.5 63 63.5
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-14 82.0 54 68.5
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.2e-14 81.3 63 60.3
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 7.1e-14 80.1 63 58.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.1e-14 80.1 63 58.7
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 9.3e-14 79.7 63 57.1
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.1e-13 78.6 63 57.1
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.1e-13 78.6 63 57.1
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-12 74.7 55 61.8
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 6.7e-12 73.6 52 65.4
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.3e-11 70.9 65 55.4
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 2.8e-10 68.2 50 60.0
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-09 66.2 52 57.7
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.1e-09 64.7 49 59.2
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 6.9e-09 63.5 37 75.7
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.6e-08 61.6 54 53.7
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.6e-08 61.6 54 53.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 5.8e-08 60.5 42 59.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.9e-07 58.2 49 55.1
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 6.5e-07 57.0 52 50.0
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.4e-06 55.8 39 61.5


User provided reference genes

Program Settings