Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 7.7e-45 183.3 86 100.0
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.3e-31 139.4 84 75.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.8e-31 138.3 84 73.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.1e-30 136.3 84 73.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.1e-30 134.4 81 75.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 9.1e-30 133.3 86 70.9
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.6e-29 131.7 84 70.2
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.5e-29 131.0 83 72.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.2e-28 128.6 87 70.1
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.2e-28 128.6 84 67.9
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-28 128.6 79 74.7
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.2e-28 128.6 83 71.1
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.8e-28 127.9 84 70.2
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 5.0e-28 127.5 84 69.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.0e-28 127.5 84 67.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 6.5e-28 127.1 84 66.7
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 8.5e-28 126.7 84 69.0
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 8.5e-28 126.7 83 69.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 8.5e-28 126.7 84 67.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.1e-27 126.3 84 65.5
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.1e-27 126.3 84 65.5
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.1e-27 126.3 81 69.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.5e-27 125.9 83 69.9
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.5e-27 125.9 87 69.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.5e-27 125.9 84 65.5
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.9e-27 125.6 83 68.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.9e-27 125.6 84 67.9
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.9e-27 125.6 84 64.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.9e-27 125.6 84 65.5
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.5e-27 125.2 81 70.4
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.5e-27 125.2 86 68.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.5e-27 125.2 84 67.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.2e-27 124.8 84 69.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.2e-27 124.8 84 64.3
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.2e-27 124.8 84 64.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.2e-27 124.8 84 65.5
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.2e-27 124.8 84 67.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 3.2e-27 124.8 81 67.9
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 4.2e-27 124.4 79 70.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 65.5
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 65.5
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 64.3
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.2e-27 124.4 84 65.5
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.2e-27 123.6 84 63.1
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.4e-27 123.2 84 63.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.2e-26 122.9 84 63.1
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-26 122.9 84 63.1
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-26 122.9 84 64.3
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.6e-26 122.5 84 63.1
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-26 122.5 84 63.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-26 122.5 84 63.1
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.6e-26 122.5 84 63.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.1e-26 122.1 87 70.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.6e-26 121.3 81 70.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 3.6e-26 121.3 84 63.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-26 120.9 84 64.3
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-26 120.9 84 64.3
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 4.7e-26 120.9 84 64.3
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 4.7e-26 120.9 84 61.9
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 6.1e-26 120.6 84 65.5
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 8.0e-26 120.2 79 70.9
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 8.0e-26 120.2 84 64.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 8.0e-26 120.2 84 65.5
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-25 119.8 84 61.9
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.0e-25 119.8 84 65.5
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.0e-25 119.8 84 64.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.0e-25 119.8 79 68.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.4e-25 119.4 81 64.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.8e-25 119.0 84 61.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.8e-25 119.0 84 61.9
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.8e-25 119.0 84 60.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.3e-25 118.6 81 63.0
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.0e-25 117.9 83 67.5
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.0e-25 117.9 84 64.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 4.0e-25 117.9 86 64.0
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.0e-25 117.9 87 64.4
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.2e-25 117.5 84 61.9
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 5.2e-25 117.5 84 61.9
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.2e-25 117.5 84 61.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.7e-25 117.1 84 60.7
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.7e-25 117.1 84 60.7
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 8.8e-25 116.7 84 63.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.0e-24 115.5 84 63.1
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.6e-24 115.2 84 60.7
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 3.3e-24 114.8 84 61.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.3e-24 114.8 84 61.9
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 3.3e-24 114.8 84 61.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 3.3e-24 114.8 81 64.2
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.3e-24 114.8 84 61.9
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.3e-24 114.8 84 61.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 4.4e-24 114.4 84 61.9
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.4e-24 114.4 81 61.7
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 5.7e-24 114.0 84 59.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 7.5e-24 113.6 81 64.2
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 9.7e-24 113.2 84 60.7
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 9.7e-24 113.2 81 66.7
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.7e-24 113.2 81 66.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.7e-24 113.2 81 66.7
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.7e-24 113.2 81 66.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 9.7e-24 113.2 84 57.1
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.7e-23 112.5 84 58.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.7e-23 112.5 84 58.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.2e-23 112.1 81 65.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 2.2e-23 112.1 81 65.4
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.7e-23 111.3 84 56.0
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.7e-23 111.3 72 72.2
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.8e-23 110.9 84 58.3
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 8.3e-23 110.2 84 57.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.4e-22 109.4 84 57.1
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.4e-22 108.6 86 55.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 2.4e-22 108.6 85 57.6
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.1e-22 107.8 75 64.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-21 105.9 65 70.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.6e-21 105.9 80 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.7e-21 105.1 84 54.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.7e-20 102.4 80 57.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-19 99.8 68 70.6
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-19 99.8 77 61.0
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 6.1e-18 94.0 84 48.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.6e-12 73.6 47 68.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.5e-11 70.9 47 61.7
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 7.2e-11 70.5 48 60.4
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 9.5e-11 70.1 47 63.8


User provided reference genes

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