Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATMG00110 Arabidopsis thaliana HOM05D008280 ORTHO05D010492 5.4e-113 411.0 207 100.0
BNapus_Darmor_BZH_scaffold_234p00070 Brassica napus HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
BolSC28t60354H Brassica oleracea HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
BraSC159t45719Z Brassica rapa HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
BraSC77t46666Z Brassica rapa HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
CARHR282640 Cardamine hirsuta HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
Sp3g25740 Schrenkiella parvula HOM05D008280 ORTHO05D010492 7.9e-112 407.1 207 99.0
BraSC48t46257Z Brassica rapa HOM05D008280 ORTHO05D010492 8.4e-106 387.1 196 98.5
CAN.G1126.5 Capsicum annuum HOM05D008280 ORTHO05D010492 1.6e-104 382.9 207 94.7
CAN.G1159.15 Capsicum annuum HOM05D008280 ORTHO05D010492 1.6e-104 382.9 207 94.7
CAN.G266.10 Capsicum annuum HOM05D008280 ORTHO05D010492 1.6e-104 382.9 207 94.7
Solyc00g020040.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 1.6e-104 382.9 207 94.7
SalBow1G8376 Salvia bowleyana HOM05D008280 ORTHO05D010492 1.1e-102 376.7 207 93.2
Sed0015016 Sechium edule HOM05D008280 ORTHO05D010492 2.5e-102 375.6 207 92.3
RcHm_v2.0_MTg0498291 Rosa chinensis HOM05D008280 ORTHO05D010492 7.4e-102 374.0 207 92.8
Lj2P1227T101 Lonicera japonica HOM05D008280 ORTHO05D010492 1.6e-101 372.9 207 92.8
DCAR_032445 Daucus carota HOM05D008280 ORTHO05D010492 2.1e-101 372.5 207 91.8
Lj5g0023723 Lotus japonicus HOM05D008280 ORTHO05D010492 6.9e-100 367.5 207 90.8
LjContig00315g0024501 Lotus japonicus HOM05D008280 ORTHO05D010492 6.9e-100 367.5 207 90.8
Lalb_Chr00c29g0408141 Lupinus albus HOM05D008280 ORTHO05D010492 9.0e-100 367.1 207 89.4
HanXRQMTg0579251 Helianthus annuus HOM05D008280 ORTHO05D010492 2.0e-99 365.9 207 91.3
Nn1g10160 Nelumbo nucifera HOM05D008280 ORTHO05D010492 2.0e-99 365.9 207 90.8
Medtr0141s0020 Medicago truncatula HOM05D008280 ORTHO05D010492 4.5e-99 364.8 207 89.9
CANSAT16G0019 Cannabis sativa HOM05D008280 ORTHO05D010492 7.6e-99 364.0 207 91.8
TPR.G21718 Trifolium pratense HOM05D008280 ORTHO05D010492 7.6e-99 364.0 207 89.9
Lsat_1_v5_gn_7_99841 Lactuca sativa HOM05D008280 ORTHO05D010492 4.2e-97 358.2 207 89.9
arahy.Tifrunner.gnm1.ann1.U3KMBF Arachis hypogaea HOM05D008280 ORTHO05D010492 1.6e-96 356.3 196 91.3
Potri.007G061721 Populus trichocarpa HOM05D008280 ORTHO05D010492 1.0e-95 353.6 207 90.8
CAN.G72.16 Capsicum annuum HOM05D008280 ORTHO05D010492 1.3e-95 353.2 207 88.4
Eucgr.E02151 Eucalyptus grandis HOM05D008280 ORTHO05D010492 1.8e-84 316.2 177 91.0
CAN.G362.37 Capsicum annuum HOM05D008280 ORTHO05D010492 2.5e-81 305.8 207 80.7
Nitab4.5_0001796g0300 Nicotiana tabacum HOM05D008280 ORTHO05D010492 1.4e-79 300.1 207 79.2
Sed0028122 Sechium edule HOM05D008280 ORTHO05D010492 3.9e-79 298.5 207 76.3
Nitab4.5_0009703g0040 Nicotiana tabacum HOM05D008280 ORTHO05D010492 1.1e-76 290.4 161 90.1
arahy.Tifrunner.gnm1.ann1.9X0QWA Arachis hypogaea HOM05D008280 ORTHO05D010492 5.3e-76 288.1 160 90.6
arahy.Tifrunner.gnm1.ann1.TAQ3SD Arachis hypogaea HOM05D008280 ORTHO05D010492 2.6e-75 285.8 160 90.0
Nitab4.5_0004471g0100 Nicotiana tabacum HOM05D008280 ORTHO05D010492 2.6e-75 285.8 177 85.9
MBI05_g23314_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 3.8e-66 255.4 144 91.7
SHI07395 Sapria himalayana HOM05D008280 ORTHO05D010492 1.9e-65 253.1 153 84.3
Solyc11g028160.1 Solanum lycopersicum HOM05D008280 ORTHO05D010492 4.1e-60 235.3 146 84.2
TAR371G0473 Trochodendron aralioides HOM05D008280 ORTHO05D010492 2.0e-59 233.0 158 79.1
Medtr0094s0120 Medicago truncatula HOM05D008280 ORTHO05D010492 8.8e-55 217.6 132 82.6
CAN.G21.55 Capsicum annuum HOM05D008280 ORTHO05D010492 7.7e-51 204.5 114 93.0
Nn7g37645 Nelumbo nucifera HOM05D008280 ORTHO05D010492 1.4e-47 193.7 100 92.0
unitig_87.g27971 Utricularia gibba HOM05D008280 ORTHO05D010492 8.6e-42 174.5 99 91.9
HanXRQChr05g0151451 Helianthus annuus HOM05D008280 ORTHO05D010492 2.3e-39 166.4 96 85.4
CAN.G676.27 Capsicum annuum HOM05D008280 ORTHO05D010492 4.0e-39 165.6 104 82.7
Lsat_1_v5_gn_7_96601 Lactuca sativa HOM05D008280 ORTHO05D010492 7.5e-38 161.4 99 86.9
Nitab4.5_0000978g0030 Nicotiana tabacum HOM05D008280 ORTHO05D010492 1.4e-36 157.1 91 90.1
MBI09_g03548_MAGBIO Magnolia biondii HOM05D008280 ORTHO05D010492 2.0e-35 153.3 123 67.5
HanXRQChr03g0087181 Helianthus annuus HOM05D008280 ORTHO05D010492 2.8e-32 142.9 99 79.8
Psat1g132520 Pisum sativum HOM05D008280 ORTHO05D010492 2.8e-32 142.9 87 88.5
Ca_30339_v3 Cicer arietinum L. HOM05D008280 ORTHO05D010492 1.3e-29 134.0 145 55.2
Gohir.A13G092605 Gossypium hirsutum HOM05D008280 ORTHO05D010492 1.7e-26 123.6 67 97.0
Lj2C1224T22 Lonicera japonica HOM05D008280 ORTHO05D010492 2.6e-22 109.8 59 93.2
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 9.9e-22 107.8 66 84.8
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 9.5e-17 91.3 58 74.1
QL08p039717 Quercus lobata HOM05D008280 ORTHO05D010492 2.2e-13 80.1 65 69.2
SHI01507 Sapria himalayana HOM05D008280 ORTHO05D010492 6.9e-07 58.5 95 42.1


User provided reference genes

Program Settings