Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 0.0e+00 1089.3 565 100.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.1e-227 792.0 563 76.9
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.9e-209 732.3 555 71.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.5e-189 666.8 573 66.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 9.1e-187 657.5 570 63.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-185 653.3 570 62.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.2e-184 649.0 571 62.7
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 7.2e-184 647.9 564 63.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 9.4e-184 647.5 571 62.5
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 9.4e-184 647.5 571 62.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 5.2e-182 641.7 558 64.0
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.2e-178 630.6 552 63.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.7e-164 582.4 553 60.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.4e-157 558.9 541 59.5
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.0e-129 466.5 538 54.1
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.5e-128 463.4 486 53.1
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.8e-97 360.9 567 40.4
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.3e-97 360.5 526 41.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.3e-96 356.7 565 39.5
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 5.3e-94 349.4 565 38.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 5.3e-94 349.4 522 41.6
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 9.1e-94 348.6 569 39.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.5e-93 347.8 538 40.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.4e-93 346.7 557 38.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.2e-91 339.7 535 40.6
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 4.7e-90 336.3 497 41.4
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 4.7e-90 336.3 497 41.4
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 6.1e-90 335.9 478 40.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.8e-89 334.3 532 39.8
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 7.4e-88 328.9 573 38.0
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.7e-87 326.6 518 39.0
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.8e-87 326.2 512 38.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 8.2e-87 325.5 476 42.9
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 9.1e-86 322.0 512 39.3
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.5e-85 319.7 520 38.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 7.7e-85 318.9 487 40.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.7e-84 317.8 501 39.5
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.8e-84 316.6 520 37.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 5.0e-84 316.2 558 36.9
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.9e-83 314.3 530 40.9
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.9e-83 314.3 512 40.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.2e-83 313.2 513 37.8
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.1e-82 310.8 518 37.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.1e-82 310.8 510 38.2
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.6e-82 310.1 403 41.4
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.8e-81 307.8 536 35.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.3e-81 307.4 542 38.0
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.9e-81 306.6 425 40.2
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.9e-81 306.6 547 38.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.9e-81 306.6 511 36.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.9e-81 306.6 588 36.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.5e-80 304.7 562 37.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-80 304.7 493 35.7
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.0e-80 304.3 522 39.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.3e-80 303.5 519 38.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.3e-80 303.5 453 39.3
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.3e-80 303.5 534 36.9
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.3e-79 301.6 410 41.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.3e-79 301.6 532 36.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.7e-79 301.2 474 38.4
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.2e-79 300.8 483 37.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.8e-79 300.4 526 38.6
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.8e-79 300.4 562 38.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.7e-79 300.1 497 38.6
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.8e-79 299.7 505 37.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 4.8e-79 299.7 627 37.2
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 6.3e-79 299.3 547 38.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.4e-78 298.1 573 36.6
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.1e-78 297.0 539 37.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 7.0e-78 295.8 633 33.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 9.1e-78 295.4 572 36.9
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.2e-77 295.0 581 35.3
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.6e-77 294.7 525 36.2
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.0e-77 294.3 581 35.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.6e-77 293.9 458 36.7
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 3.5e-77 293.5 484 37.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.5e-77 293.1 422 38.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.9e-76 290.4 502 37.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.9e-76 290.4 584 35.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.5e-75 286.2 455 36.9
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-74 285.0 515 36.1
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.1e-74 284.3 544 34.4
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.7e-74 283.9 462 37.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.7e-74 283.1 528 35.8
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.0e-74 282.3 434 39.2
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 5.2e-73 279.6 414 37.0
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 6.7e-73 279.3 571 36.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 6.7e-73 279.3 612 33.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.2e-72 278.5 490 35.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 5.7e-72 276.2 462 37.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.7e-72 275.4 447 37.8
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.8e-71 273.9 490 33.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.8e-71 273.9 559 33.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.7e-71 273.5 488 37.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 4.8e-71 273.1 550 34.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.4e-70 270.8 458 34.5
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.6e-69 268.1 461 34.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.7e-69 267.3 577 34.3
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.5e-69 266.9 547 33.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.7e-69 265.8 559 33.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 5.0e-68 263.1 391 39.4
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-66 256.9 575 32.9
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 4.4e-64 250.0 540 32.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.1e-62 245.4 496 33.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 7.7e-61 239.2 363 35.5
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 9.5e-59 232.3 505 32.3
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.1e-58 229.6 466 32.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.0e-57 227.3 481 35.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 7.0e-54 216.1 489 34.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.1e-51 208.8 231 44.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.1e-51 208.8 385 36.4
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-51 208.0 497 34.2
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.9e-51 208.0 497 34.2
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.9e-51 208.0 497 34.2
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.1e-50 203.0 497 33.6
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.1e-50 203.0 497 33.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.2e-40 172.2 170 45.3
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.4e-40 170.6 220 40.9
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.8e-40 169.9 349 34.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.7e-39 167.2 309 36.6
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.2e-38 164.1 325 35.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.3e-35 153.7 394 33.2
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.1e-34 151.4 420 35.0
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.1e-30 139.0 240 35.0
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.9e-30 138.3 137 46.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 8.6e-28 129.4 290 35.2
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.5e-27 127.9 358 29.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 8.9e-25 119.4 284 29.9
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 8.9e-25 119.4 441 29.3
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.0e-24 118.2 284 29.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.4e-24 117.1 211 31.8
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.4e-23 112.8 207 34.8
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.0e-21 106.7 380 28.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.5e-19 102.1 285 29.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.9e-19 101.7 367 25.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.3e-19 100.9 156 37.8
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.6e-18 98.6 131 38.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-14 85.5 129 38.0
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.4e-14 84.7 88 44.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.4e-14 84.7 88 44.3
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-13 81.3 275 25.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.7e-12 78.6 289 22.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.4e-08 64.3 125 39.2


User provided reference genes

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