Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.3e-175 619.8 347 100.0
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.9e-171 605.9 316 98.4
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 3.5e-165 585.1 310 96.5
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.1e-161 573.5 316 93.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 7.6e-160 567.4 312 92.9
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 9.9e-160 567.0 315 91.7
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 7.4e-155 550.8 317 89.6
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 7.4e-155 550.8 317 89.6
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 7.4e-155 550.8 317 89.6
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 9.6e-155 550.4 312 89.7
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 9.6e-155 550.4 312 89.7
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 9.6e-155 550.4 312 89.7
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 9.6e-155 550.4 312 89.7
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 9.6e-155 550.4 312 89.7
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 9.0e-153 543.9 317 88.6
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 9.0e-153 543.9 317 88.6
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.7e-151 539.7 314 88.5
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 2.5e-147 525.8 327 84.1
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 2.4e-145 519.2 315 85.1
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.4e-144 515.4 311 83.3
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 7.7e-144 514.2 315 81.3
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 2.5e-142 509.2 310 81.3
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.2e-141 506.9 312 81.1
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-141 506.9 309 80.9
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.3e-140 502.7 310 80.6
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 8.8e-140 500.7 304 81.6
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 8.8e-140 500.7 303 82.8
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 8.8e-140 500.7 317 80.4
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 2.0e-139 499.6 317 80.1
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 2.0e-139 499.6 310 81.6
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 7.4e-139 497.7 310 79.7
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 9.7e-139 497.3 303 81.2
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.7e-138 496.5 312 79.2
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.2e-138 496.1 303 81.5
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.8e-138 495.7 312 79.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.1e-137 493.8 312 78.5
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.4e-137 492.7 312 78.8
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.1e-137 491.9 304 81.2
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 4.1e-137 491.9 312 80.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.2e-136 490.3 303 79.5
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.5e-136 490.0 306 79.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.0e-136 489.6 316 76.6
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 7.7e-136 487.6 312 79.2
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.7e-135 486.5 317 77.6
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 5.0e-135 485.0 319 77.7
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 5.0e-135 485.0 308 79.2
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 5.0e-135 485.0 297 80.8
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 6.5e-135 484.6 313 78.6
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 1.1e-134 483.8 316 78.2
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.9e-134 483.0 316 76.3
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 2.5e-134 482.6 305 79.7
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 5.5e-134 481.5 314 77.7
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.2e-133 480.3 315 78.4
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.2e-133 480.3 316 78.2
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-133 479.9 314 78.0
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.6e-133 479.9 312 78.5
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-133 479.9 312 76.6
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.1e-133 479.6 313 77.6
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 2.7e-133 479.2 297 80.1
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.6e-133 478.8 314 78.0
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 4.7e-133 478.4 306 78.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 4.7e-133 478.4 303 79.2
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 7.9e-133 477.6 320 76.6
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.1e-132 474.9 313 77.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.0e-131 473.0 303 79.2
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.0e-131 473.0 310 77.7
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.0e-131 473.0 312 76.9
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.6e-131 472.6 304 77.3
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 4.4e-131 471.9 303 77.9
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.7e-130 469.9 300 78.7
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 4.8e-130 468.4 316 74.7
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 6.3e-130 468.0 310 76.8
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.4e-129 466.1 354 69.5
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.1e-129 465.7 296 79.7
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 3.1e-129 465.7 310 76.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 2.0e-128 463.0 327 73.4
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 2.6e-128 462.6 310 74.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 3.5e-128 462.2 298 78.5
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 5.0e-127 458.4 312 75.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 3.2e-126 455.7 304 76.0
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 5.5e-126 454.9 298 77.2
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 5.5e-126 454.9 304 75.7
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 9.4e-126 454.1 302 75.8
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.6e-125 453.4 308 74.4
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 3.6e-125 452.2 301 74.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 3.6e-125 452.2 309 71.8
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 4.7e-125 451.8 279 80.6
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 6.1e-125 451.4 279 80.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 8.0e-125 451.1 305 76.1
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 3.0e-124 449.1 305 75.1
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.0e-123 446.4 305 75.1
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 2.0e-123 446.4 306 75.2
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.3e-123 445.7 302 73.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 3.3e-123 445.7 305 74.8
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 4.8e-122 441.8 318 70.8
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.8e-122 441.8 318 70.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 4.8e-122 441.8 288 77.4
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 8.2e-122 441.0 319 69.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.1e-121 438.7 309 74.1
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 7.0e-121 438.0 304 71.1
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.9e-120 434.9 323 69.3
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.2e-119 433.0 323 69.0
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.8e-119 432.2 302 73.2
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.9e-118 429.9 323 68.7
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.7e-117 426.0 254 82.3
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.2e-115 420.6 250 82.4
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.9e-111 406.0 313 66.8
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.2e-109 400.6 313 66.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.3e-108 396.4 299 68.9
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 6.1e-101 371.7 232 78.9
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.4e-100 370.5 254 73.2
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.2e-98 363.2 285 61.8
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.8e-98 362.8 302 59.9
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 3.2e-97 359.4 303 58.4
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.2e-97 359.4 232 78.4
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 9.2e-97 357.8 292 66.4
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 9.2e-97 357.8 293 65.9
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 8.6e-95 351.3 289 60.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 3.3e-94 349.4 225 77.8
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.0e-92 344.4 273 60.1
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.8e-92 343.6 279 68.5
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.0e-92 342.4 225 75.6
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 4.4e-91 339.0 293 56.7
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.0e-83 313.5 264 59.5
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.4e-73 280.0 243 63.0
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 5.4e-73 278.9 268 49.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 4.6e-72 275.8 290 49.3
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 8.9e-68 261.5 149 83.9
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.8e-66 256.1 166 78.3
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 8.4e-66 255.0 303 48.8
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.9e-50 203.4 229 45.0
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.5e-48 196.4 165 61.8
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.0e-44 183.0 112 78.6
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 7.9e-40 168.7 397 32.5
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 4.3e-38 162.9 286 36.4
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.8e-35 152.5 94 78.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.7e-34 151.0 94 77.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.7e-34 151.0 94 77.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-33 147.1 194 46.9
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 3.2e-33 146.7 114 71.1
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 7.1e-33 145.6 95 80.0
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.8e-28 131.0 113 63.7
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.5e-27 126.3 102 65.7
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.3e-18 98.2 73 68.5
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.8e-15 87.8 53 77.4
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.4e-12 78.2 47 74.5
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.4e-12 78.2 47 74.5
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 3.1e-12 77.0 50 74.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.3e-12 76.3 54 74.1
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.5e-11 74.7 95 48.4
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.9e-10 70.5 56 67.9
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.7e-07 59.3 84 41.7


User provided reference genes

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