Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 8.2e-97 357.1 182 100.0
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 8.5e-94 347.1 182 95.6
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 3.5e-87 325.1 180 90.0
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 5.9e-87 324.3 183 89.6
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 7.7e-87 323.9 182 89.0
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 2.0e-82 309.3 182 86.8
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 5.7e-74 281.2 183 80.9
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 1.9e-69 266.2 163 83.4
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 2.5e-69 265.8 187 77.0
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 3.2e-69 265.4 163 83.4
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 5.5e-69 264.6 163 82.8
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 7.2e-69 264.2 163 82.8
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.8e-67 259.6 163 80.4
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 9.2e-64 247.3 163 77.9
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 5.0e-62 241.5 177 68.9
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 3.3e-61 238.8 176 69.9
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.7e-60 235.0 168 69.6
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 6.1e-60 234.6 170 68.2
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 6.1e-60 234.6 170 68.2
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 6.1e-60 234.6 172 68.6
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 8.0e-60 234.2 172 70.3
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 1.8e-59 233.0 176 69.9
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 2.0e-58 229.6 173 68.8
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 2.6e-58 229.2 175 66.9
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 3.4e-58 228.8 172 66.3
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.7e-57 226.5 177 66.1
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.7e-57 226.5 169 71.0
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 2.9e-57 225.7 172 66.9
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 3.7e-57 225.3 165 68.5
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 4.9e-57 224.9 169 68.0
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 6.4e-57 224.6 147 76.2
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 8.3e-57 224.2 168 68.5
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 8.3e-57 224.2 174 67.2
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 8.3e-57 224.2 165 69.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.1e-56 223.8 147 74.8
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 1.4e-56 223.4 177 63.3
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 4.1e-56 221.9 167 68.3
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 5.4e-56 221.5 172 65.7
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 9.2e-56 220.7 164 66.5
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 9.2e-56 220.7 172 66.9
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 1.2e-55 220.3 172 66.3
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 1.6e-55 219.9 176 65.9
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.7e-55 219.2 176 64.8
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.5e-55 218.8 176 62.5
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 3.5e-55 218.8 176 63.6
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 3.5e-55 218.8 176 63.6
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 4.6e-55 218.4 172 65.1
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 1.0e-54 217.2 165 66.7
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.0e-54 217.2 163 66.3
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.3e-54 216.9 172 61.6
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.3e-54 216.1 151 71.5
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.3e-54 216.1 163 65.6
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.9e-54 215.3 176 62.5
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 3.9e-54 215.3 172 64.5
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 5.0e-54 214.9 176 62.5
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 6.6e-54 214.5 175 64.6
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 8.6e-54 214.2 172 65.7
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 2.5e-53 212.6 172 64.0
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 2.5e-53 212.6 169 65.1
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 4.3e-53 211.8 168 63.7
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 4.3e-53 211.8 163 67.5
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.2e-52 210.3 171 62.0
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.2e-52 210.3 174 61.5
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 2.1e-52 209.5 168 63.1
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.4e-51 206.8 130 76.2
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 1.4e-51 206.8 169 63.3
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 1.4e-51 206.8 169 63.3
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 1.4e-51 206.8 173 62.4
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.8e-51 206.5 169 62.7
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.3e-51 206.1 171 61.4
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.3e-51 206.1 166 63.3
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 8.9e-51 204.1 171 60.8
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.2e-50 203.8 170 62.9
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 2.0e-50 203.0 137 75.2
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 5.8e-50 201.4 142 70.4
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.8e-50 201.4 171 60.2
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 5.8e-50 201.4 171 59.6
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 9.8e-50 200.7 166 63.3
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.3e-49 200.3 159 63.5
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 2.2e-49 199.5 135 71.9
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 2.9e-49 199.1 171 62.0
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 3.7e-49 198.7 176 59.7
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.9e-49 198.4 151 67.5
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 4.9e-49 198.4 151 67.5
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 6.4e-49 198.0 137 74.5
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 6.4e-49 198.0 201 56.2
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 8.3e-49 197.6 174 59.8
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.1e-48 197.2 135 71.1
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.4e-48 196.8 165 61.8
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 2.4e-48 196.1 172 60.5
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 4.1e-48 195.3 170 61.8
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 5.4e-48 194.9 170 60.0
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 1.2e-47 193.7 231 51.1
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 1.6e-47 193.4 167 62.9
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.6e-47 193.4 176 55.7
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 2.7e-47 192.6 171 57.9
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 3.0e-46 189.1 132 72.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 5.0e-46 188.3 173 60.1
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 8.6e-46 187.6 128 71.1
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.1e-45 187.2 117 79.5
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.6e-44 183.3 170 58.8
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.8e-44 182.6 148 61.5
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 8.1e-44 181.0 117 71.8
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.8e-43 179.9 163 58.9
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 9.8e-42 174.1 163 55.8
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.2e-41 172.9 153 58.2
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 2.9e-41 172.6 107 75.7
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.1e-40 170.6 153 60.8
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 4.1e-40 168.7 135 64.4
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 1.0e-38 164.1 114 68.4
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.3e-38 163.7 123 65.9
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 1.5e-37 160.2 163 58.9
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.3e-37 159.1 133 62.4
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 5.6e-37 158.3 173 54.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 4.0e-35 152.1 151 53.6
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.5e-34 150.2 177 48.6
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 6.4e-33 144.8 184 48.9
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.7e-30 136.7 176 47.7
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 2.1e-28 129.8 151 51.0
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.8e-27 126.7 176 46.6
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.2e-25 119.8 150 47.3
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 8.4e-25 117.9 104 54.8
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 3.5e-23 112.5 99 56.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.6e-20 102.4 122 49.2
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 9.0e-19 97.8 80 61.2
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 3.4e-18 95.9 85 57.6
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-17 93.2 138 41.3
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.2e-16 89.0 65 67.7
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 3.6e-12 75.9 175 30.9
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 1.1e-11 74.3 76 52.6
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 4.9e-09 65.5 116 37.9
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.9e-08 63.5 140 35.7
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 3.0e-06 56.2 36 69.4


User provided reference genes

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