Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 4.2e-119 431.4 222 100.0
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.4e-103 379.8 222 88.3
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 2.8e-91 339.0 231 81.8
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.1e-90 337.0 233 77.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 3.4e-89 332.0 233 77.3
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 2.9e-88 328.9 231 75.3
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 5.7e-84 314.7 227 74.9
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 9.7e-84 313.9 231 75.3
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 9.7e-84 313.9 227 74.0
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 1.7e-83 313.2 227 75.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 8.2e-83 310.8 227 75.3
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 7.0e-82 307.8 229 73.8
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.6e-81 305.8 229 71.2
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 4.5e-81 305.1 234 71.8
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 7.7e-81 304.3 230 71.7
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.5e-79 300.1 225 72.4
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.5e-79 300.1 225 72.4
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 3.6e-78 295.4 230 70.0
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 3.8e-72 275.4 217 70.5
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.7e-67 260.0 228 66.7
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.0e-65 253.1 230 60.4
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 3.6e-62 242.3 168 74.4
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.1e-58 230.7 224 57.1
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 7.0e-58 228.0 228 57.5
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.2e-57 227.3 222 56.3
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.0e-57 226.5 238 54.2
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.0e-57 226.5 227 57.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.0e-57 226.5 226 56.6
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.5e-57 225.7 227 58.1
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.3e-56 223.8 223 56.5
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.7e-56 223.4 240 54.2
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.7e-56 223.4 226 55.3
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.9e-56 222.6 226 53.5
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 2.9e-56 222.6 226 54.9
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.6e-56 221.1 226 54.4
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.1e-55 220.7 226 54.0
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.5e-55 220.3 233 56.7
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.5e-55 220.3 243 54.3
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.9e-55 219.9 186 60.8
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.3e-55 219.2 227 57.3
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 4.3e-55 218.8 225 54.7
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 4.3e-55 218.8 231 53.2
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 5.6e-55 218.4 232 53.9
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 7.3e-55 218.0 205 57.1
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.2e-54 217.2 242 53.3
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.1e-54 216.5 238 52.1
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.8e-54 216.1 242 52.1
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.8e-54 216.1 242 52.1
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.6e-54 215.7 226 54.0
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.6e-54 215.7 204 59.3
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 4.7e-54 215.3 228 53.1
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 4.7e-54 215.3 214 56.5
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 8.0e-54 214.5 244 50.8
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 8.0e-54 214.5 186 61.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.4e-53 213.8 230 54.8
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 1.4e-53 213.8 224 54.5
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 4.0e-53 212.2 236 54.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.0e-53 212.2 227 55.9
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 5.2e-53 211.8 243 51.0
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 6.8e-53 211.5 244 50.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 8.9e-53 211.1 224 53.1
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.2e-52 210.7 232 51.3
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.5e-52 210.3 232 53.0
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 3.4e-52 209.1 205 55.1
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 3.4e-52 209.1 231 53.7
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 3.4e-52 209.1 155 67.1
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 5.7e-52 208.4 257 50.2
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 9.8e-52 207.6 231 53.2
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 9.8e-52 207.6 236 55.1
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.7e-51 206.8 227 52.0
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.2e-51 206.5 222 52.7
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.7e-51 205.7 223 53.4
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 4.9e-51 205.3 229 49.8
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 4.9e-51 205.3 225 52.0
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 4.9e-51 205.3 225 52.0
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 8.3e-51 204.5 233 52.4
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.1e-50 204.1 228 52.2
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.4e-50 203.8 228 52.6
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.8e-50 203.4 231 55.8
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.4e-50 203.0 222 51.8
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 4.1e-50 202.2 221 52.9
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 4.1e-50 202.2 227 51.5
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 5.4e-50 201.8 238 50.8
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.4e-50 201.8 230 51.7
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 7.0e-50 201.4 233 49.8
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 9.2e-50 201.1 224 50.4
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 9.2e-50 201.1 234 50.9
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.2e-49 200.7 228 52.2
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.2e-49 200.7 225 52.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 4.6e-49 198.7 233 49.8
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 4.6e-49 198.7 227 55.5
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.9e-49 198.4 227 50.2
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.3e-48 197.2 244 49.6
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.7e-48 196.8 236 52.5
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 3.0e-48 196.1 224 49.6
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 3.9e-48 195.7 211 55.5
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 6.6e-48 194.9 169 59.8
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.6e-48 194.5 241 48.1
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.1e-47 194.1 161 61.5
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.5e-47 193.0 252 47.6
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 3.3e-47 192.6 222 50.0
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.3e-47 192.2 229 49.8
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 5.6e-47 191.8 224 51.3
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 5.6e-47 191.8 170 57.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 9.5e-47 191.0 229 49.3
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-46 190.7 242 48.8
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-46 190.7 219 50.7
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.6e-46 190.3 225 48.0
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 2.1e-46 189.9 231 47.6
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.6e-46 189.1 221 48.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 4.7e-46 188.7 241 47.7
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 6.2e-46 188.3 249 47.0
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 6.2e-46 188.3 203 51.2
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-45 187.6 250 46.8
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 2.3e-45 186.4 226 54.0
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 6.8e-45 184.9 223 48.4
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 6.8e-45 184.9 154 59.7
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.9e-45 184.5 256 45.7
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 3.4e-44 182.6 227 45.8
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.3e-43 180.6 241 46.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-43 180.6 220 50.0
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.7e-43 179.1 209 50.7
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 4.9e-43 178.7 220 50.0
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.2e-42 176.0 212 47.6
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 7.0e-42 174.9 246 41.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 2.3e-40 169.9 133 63.2
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 3.9e-40 169.1 208 47.6
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.6e-40 167.9 221 44.3
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.9e-39 166.8 226 45.6
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 2.5e-39 166.4 182 54.9
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.4e-37 160.6 148 56.8
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.5e-36 157.1 185 57.8
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.3e-35 154.1 235 44.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 6.4e-35 151.8 224 42.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 5.4e-34 148.7 132 57.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 5.4e-34 148.7 127 61.4
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-33 147.1 142 54.2
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 2.7e-33 146.4 249 40.2
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 6.0e-33 145.2 167 55.1
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 3.4e-28 129.4 234 39.3
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.1e-26 124.4 167 44.3
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.3e-24 117.5 83 74.7
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 5.1e-24 115.5 220 34.5
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 2.5e-23 113.2 220 35.9
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.3e-19 100.9 75 64.0
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.6e-17 94.0 64 67.2
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.1e-15 87.8 56 69.6
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.1e-15 87.8 56 67.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.3e-15 85.9 57 70.2
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.4e-10 70.9 67 50.7
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.0e-08 64.7 53 56.6
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 5.1e-08 62.4 83 41.0
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.3e-07 59.7 52 53.8
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 3.3e-07 59.7 69 37.7
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.2e-06 55.5 46 58.7


User provided reference genes

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