Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.6e-152 540.8 345 100.0
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.8e-136 488.0 349 92.3
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 5.5e-134 481.5 349 84.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 7.9e-133 477.6 350 82.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 6.9e-129 464.5 352 83.0
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.4e-126 456.8 349 79.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.1e-121 439.1 356 80.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 6.9e-121 438.0 356 80.3
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.2e-120 437.2 352 78.1
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.9e-119 432.6 352 80.1
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-118 430.6 355 79.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.1e-118 430.6 355 79.4
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.5e-118 429.5 352 77.3
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 7.2e-118 427.9 352 77.0
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.1e-117 426.4 352 75.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.6e-109 400.2 352 81.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.8e-106 389.4 341 68.0
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.7e-100 368.2 350 68.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 5.0e-95 352.1 336 72.0
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.2e-94 349.0 345 61.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.0e-87 325.5 336 58.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.9e-86 323.6 336 58.3
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 6.1e-85 318.5 232 69.0
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.8e-84 317.0 230 69.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 5.2e-84 315.5 332 56.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.0e-83 313.5 336 57.1
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.4e-83 312.8 323 58.5
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 7.5e-83 311.6 292 61.6
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.2e-82 310.1 326 58.9
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.8e-82 309.7 335 51.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.4e-81 307.4 337 51.9
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 2.4e-81 306.6 323 54.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.1e-81 306.2 343 57.1
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 5.4e-81 305.4 313 57.2
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 5.4e-81 305.4 335 54.3
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.2e-80 304.3 310 57.1
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.0e-80 303.5 227 67.8
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.0e-80 303.5 321 52.3
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.7e-80 303.1 320 57.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 4.5e-80 302.4 332 58.4
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.9e-80 302.0 331 54.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.8e-80 301.6 337 52.2
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.0e-79 301.2 316 59.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.0e-79 301.2 336 63.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.3e-79 300.1 333 61.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.8e-79 299.3 210 69.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 3.8e-79 299.3 357 58.5
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.1e-78 297.7 324 54.3
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.1e-78 297.7 231 67.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.1e-78 297.7 232 63.8
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.1e-78 297.7 312 58.7
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.3e-78 296.2 202 71.8
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.3e-78 296.2 302 71.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.3e-78 296.2 279 69.9
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.6e-78 295.4 277 75.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 9.5e-78 294.7 317 56.2
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 9.5e-78 294.7 191 74.3
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.6e-77 293.9 322 54.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.8e-77 293.1 324 57.7
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.8e-77 293.1 272 59.6
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.6e-77 292.7 314 66.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.6e-77 292.7 231 64.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 6.1e-77 292.0 231 62.8
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.0e-76 291.2 302 53.0
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.8e-76 290.4 233 62.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-76 290.4 231 62.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.8e-76 290.4 231 64.1
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.0e-76 289.3 325 53.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 5.2e-76 288.9 314 66.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.2e-76 288.9 314 66.6
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 8.9e-76 288.1 231 63.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.2e-75 287.7 314 55.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.2e-75 287.7 290 55.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.5e-75 287.3 302 69.2
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.5e-75 287.3 334 52.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.0e-75 287.0 336 59.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.0e-75 287.0 214 65.4
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.0e-75 287.0 335 52.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.0e-75 287.0 316 49.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 3.4e-75 286.2 301 65.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.4e-75 285.8 231 61.5
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 4.4e-75 285.8 341 56.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 5.7e-75 285.4 330 54.2
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.5e-75 285.0 210 63.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 7.5e-75 285.0 220 64.1
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 7.5e-75 285.0 299 68.9
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.3e-74 284.3 303 51.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.2e-74 283.5 309 50.2
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.9e-74 282.3 287 63.8
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 6.4e-74 282.0 333 65.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 8.3e-74 281.6 279 63.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.8e-73 280.4 325 62.2
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.4e-73 280.0 305 55.7
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 2.0e-72 276.9 306 61.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.7e-72 276.6 258 58.9
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.9e-72 275.4 338 47.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.0e-71 273.1 296 53.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.0e-71 273.1 309 57.0
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 3.0e-71 273.1 221 62.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.9e-70 270.4 303 52.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.6e-69 267.3 283 55.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.4e-66 255.4 293 47.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.2e-65 253.1 267 51.7
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.2e-64 251.1 241 56.0
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.3e-63 246.9 162 71.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 6.6e-63 245.4 258 58.1
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.8e-60 235.3 253 55.7
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.2e-58 230.3 154 70.8
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.1e-55 219.2 136 75.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 7.3e-54 215.3 192 53.1
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.3e-54 215.3 187 56.7
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.2e-53 214.5 260 49.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 6.2e-53 212.2 202 48.5
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.2e-52 209.1 154 62.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 7.8e-48 195.3 186 50.0
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.2e-45 185.7 135 63.7
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-44 184.9 217 44.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.7e-42 177.6 125 72.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.1e-37 158.7 222 38.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.8e-36 157.5 177 44.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.9e-33 147.5 90 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.9e-33 147.5 92 78.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.6e-32 144.4 246 42.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.5e-27 126.3 156 41.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-23 112.1 187 30.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.5e-22 110.5 198 31.8
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.3e-22 110.2 178 37.6
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.8e-21 107.1 65 78.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.2e-17 93.2 144 38.2
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.7e-14 82.8 187 29.4
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.8e-13 80.5 158 50.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.6e-11 73.9 191 26.7
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 2.9e-10 70.5 228 25.0
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.1e-08 64.3 83 41.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 2.7e-08 63.9 96 30.2
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.6e-08 63.5 74 48.6


User provided reference genes

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