Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 5.2e-143 511.1 281 100.0
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 2.2e-125 452.6 281 89.3
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 6.7e-122 441.0 281 83.6
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.8e-114 416.4 287 82.6
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 3.1e-103 379.0 281 75.8
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 6.9e-103 377.9 284 77.1
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.6e-99 366.7 280 75.4
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-93 347.1 280 73.2
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.3e-93 347.1 280 73.2
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.3e-93 347.1 280 73.2
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.1e-92 344.0 283 73.5
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-92 344.0 280 72.1
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 4.4e-89 332.0 300 67.3
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 9.7e-89 330.9 270 73.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.8e-66 256.9 280 53.6
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.8e-66 256.9 178 74.2
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 5.2e-66 255.4 178 73.6
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.9e-66 254.6 184 72.3
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.2e-65 254.2 181 71.8
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.5e-65 253.8 179 73.2
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.0e-65 253.4 179 73.7
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.0e-65 253.4 179 73.2
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 3.4e-65 252.7 181 72.9
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 4.4e-65 252.3 183 70.5
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 5.7e-65 251.9 178 73.0
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 7.5e-65 251.5 283 53.0
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 9.8e-65 251.1 179 72.6
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.3e-64 250.8 178 72.5
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.3e-64 250.8 283 52.7
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.7e-64 250.4 184 71.7
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.7e-64 250.4 178 71.9
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.2e-64 250.0 178 71.3
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 2.8e-64 249.6 186 71.5
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.9e-64 248.8 177 71.8
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 4.9e-64 248.8 176 72.7
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 6.3e-64 248.4 178 71.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 8.3e-64 248.1 188 69.1
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.1e-63 247.7 231 58.0
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 4.1e-63 245.7 282 51.4
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.0e-63 245.0 183 68.3
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 7.0e-63 245.0 178 70.8
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 9.2e-63 244.6 192 67.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 9.2e-63 244.6 178 71.3
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 9.2e-63 244.6 185 67.6
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.2e-62 244.2 179 68.7
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.0e-62 243.4 187 68.4
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 3.5e-62 242.7 250 54.4
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 4.5e-62 242.3 179 72.6
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 4.5e-62 242.3 181 69.1
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 1.0e-61 241.1 180 70.6
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.0e-61 241.1 187 69.0
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 2.3e-61 240.0 297 49.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.3e-61 240.0 281 50.9
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.3e-61 240.0 180 69.4
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 3.8e-61 239.2 179 66.5
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 5.0e-61 238.8 184 66.8
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 8.6e-61 238.0 179 67.6
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.9e-60 236.9 178 68.5
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.9e-60 236.9 188 67.0
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 4.3e-60 235.7 314 52.5
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-59 234.2 183 66.7
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.6e-59 233.8 227 58.1
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 2.8e-59 233.0 180 67.2
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 2.8e-59 233.0 181 64.1
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 3.6e-59 232.6 181 64.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 9.8e-57 224.6 168 65.5
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.3e-56 224.2 170 67.1
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.9e-56 223.0 181 65.7
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 3.7e-56 222.6 186 60.2
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.1e-55 221.1 158 70.9
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.1e-55 219.2 183 61.7
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.2e-54 217.6 178 65.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.7e-54 216.5 169 65.7
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.6e-54 215.7 172 64.5
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.0e-54 215.3 169 65.1
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.0e-53 214.5 156 70.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 3.9e-53 212.6 170 64.7
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 5.6e-52 208.8 167 64.7
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.2e-51 207.6 164 64.0
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 2.8e-51 206.5 168 63.7
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.5e-49 200.7 143 67.1
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.5e-49 200.7 158 64.6
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.0e-49 200.3 150 64.7
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 4.1e-47 192.6 147 65.3
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 9.2e-47 191.4 143 66.4
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.0e-45 188.0 131 69.5
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 5.0e-45 185.7 148 66.9
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.3e-44 182.6 181 56.4
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.0e-41 173.7 180 53.9
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 4.4e-41 172.6 155 57.4
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 9.9e-41 171.4 186 53.8
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.2e-39 166.4 170 54.1
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 3.5e-38 162.9 172 56.4
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 5.1e-37 159.1 158 56.3
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.1e-36 157.9 142 58.5
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 5.6e-36 155.6 182 48.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.6e-35 154.1 145 62.8
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.4e-34 151.0 117 66.7
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.6e-33 146.7 145 62.1
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 6.4e-32 142.1 161 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.1e-30 137.1 162 48.8
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 3.1e-26 123.2 105 55.2
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 5.2e-26 122.5 130 51.5
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 2.6e-25 120.2 126 55.6
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 3.4e-25 119.8 104 59.6
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 9.9e-25 118.2 88 63.6
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.4e-23 113.6 72 76.4
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.4e-23 112.5 86 72.1
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 3.5e-22 109.8 77 68.8
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 6.0e-22 109.0 192 38.5
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 6.0e-22 109.0 97 55.7
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 7.8e-22 108.6 101 61.4
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.7e-21 107.5 184 42.4
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 5.1e-21 105.9 66 75.8
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.6e-19 100.9 72 79.2
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.5e-17 94.4 86 61.6
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.8e-16 89.7 66 68.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.1e-15 88.2 66 68.2
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 2.5e-12 77.0 68 54.4
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.7e-08 64.3 51 58.8
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 2.2e-08 63.9 107 35.5
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.9e-08 63.5 43 67.4
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.8e-08 63.2 86 40.7


User provided reference genes

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