Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.5e-284 982.2 538 100.0
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.2e-230 802.4 545 83.7
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 1.2e-204 716.8 567 75.1
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 8.4e-182 641.0 538 71.9
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 5.4e-181 638.3 541 71.9
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 5.1e-179 631.7 544 70.2
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 3.1e-176 622.5 538 69.9
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 1.4e-173 613.6 539 69.0
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 5.3e-168 595.1 536 68.1
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.9e-166 589.3 540 67.4
Sp7g00310 Schrenkiella parvula HOM05D002129 ORTHO05D002188 2.3e-131 473.4 545 56.5
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 2.7e-127 459.9 703 46.9
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.6e-103 380.9 691 44.0
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.7e-103 380.2 626 46.2
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 9.8e-98 361.7 622 45.2
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 4.1e-96 356.3 629 43.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.6e-92 344.4 603 45.4
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.0e-90 337.4 616 42.7
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 1.9e-88 330.9 629 42.4
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 4.1e-88 329.7 674 40.9
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 3.5e-87 326.6 579 45.6
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 1.8e-83 314.3 659 40.5
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 1.2e-82 311.6 659 40.1
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 4.8e-76 289.7 435 49.7
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 5.3e-75 286.2 692 37.6
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 5.8e-74 282.7 688 37.9
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 1.3e-54 218.4 752 29.8
C06p20200 Brassica napus HOM05D002129 ORTHO05D002188 1.4e-51 208.4 198 66.2
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 2.1e-47 194.5 723 28.8
BolC6t37202H Brassica oleracea HOM05D002129 ORTHO05D002188 1.0e-46 192.2 154 71.4
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 5.1e-46 189.9 507 33.1
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 5.1e-46 189.9 755 28.3
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 7.4e-45 186.0 614 30.8
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 2.2e-44 184.5 594 30.8
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 9.0e-43 179.1 768 28.3
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 1.5e-42 178.3 264 41.3
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 2.0e-42 177.9 455 34.3
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 1.0e-41 175.6 633 29.5
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 2.2e-41 174.5 723 27.5
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 1.4e-40 171.8 593 29.7
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 1.0e-38 165.6 688 27.5
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 1.0e-38 165.6 453 31.6
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 1.0e-38 165.6 575 28.7
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 3.3e-37 160.6 711 28.3
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 5.7e-37 159.8 458 30.3
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 7.4e-37 159.5 479 33.0
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.7e-36 158.3 590 29.2
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 2.8e-36 157.5 585 29.7
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.7e-36 157.1 447 33.1
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.8e-36 156.8 496 31.9
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.8e-36 156.8 443 33.6
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.8e-36 156.8 476 33.0
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.4e-35 155.2 424 32.5
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 4.1e-35 153.7 759 27.0
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 5.3e-35 153.3 747 26.9
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 4.5e-34 150.2 600 28.0
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.8e-33 147.1 724 27.8
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 5.0e-33 146.7 799 24.0
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 8.5e-33 146.0 282 37.6
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 3.2e-32 144.1 618 27.7
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 4.2e-32 143.7 618 27.7
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.7e-31 140.2 232 41.4
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 4.7e-31 140.2 424 30.4
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 7.9e-31 139.4 739 27.3
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 2.3e-30 137.9 402 32.8
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.1e-30 136.7 311 37.3
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.1e-30 136.7 409 32.0
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.7e-30 136.3 324 36.7
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 6.7e-30 136.3 699 24.9
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 1.1e-29 135.6 591 27.4
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 1.5e-29 135.2 300 37.7
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 7.4e-29 132.9 720 26.4
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.7e-28 131.7 708 27.5
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 2.8e-28 131.0 508 29.5
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 3.1e-27 127.5 256 37.1
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 4.1e-27 127.1 586 28.2
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.3e-27 126.7 345 31.9
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.0e-26 124.8 430 29.8
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 2.6e-26 124.4 398 31.9
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 3.5e-26 124.0 608 26.3
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.5e-26 123.6 498 27.5
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 5.9e-26 123.2 561 27.8
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 8.5e-25 119.4 515 26.8
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 6.7e-22 109.8 282 36.2
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 8.8e-22 109.4 512 28.1
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 3.3e-21 107.5 701 24.3
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 3.3e-21 107.5 498 27.5
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 1.7e-20 105.1 529 24.8
Gohir.D08G132401 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.7e-20 105.1 739 25.7
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 3.1e-19 100.9 149 49.0
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 3.1e-19 100.9 706 25.1
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 9.1e-19 99.4 338 29.9
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 9.1e-19 99.4 249 34.1
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 2.0e-18 98.2 433 30.0
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 4.5e-18 97.1 306 27.8
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 5.9e-18 96.7 599 24.5
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 5.9e-18 96.7 440 26.6
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 3.8e-17 94.0 362 28.2
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.8e-17 94.0 262 31.3
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 5.0e-17 93.6 216 34.7
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 5.0e-17 93.6 460 25.2
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 6.5e-17 93.2 210 35.2
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 8.5e-17 92.8 506 25.9
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 2.5e-16 91.3 461 27.1
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 9.4e-16 89.4 329 28.3
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 9.4e-16 89.4 211 33.2
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.1e-15 88.2 308 28.9
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 3.6e-15 87.4 168 39.3
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 4.7e-15 87.0 309 26.9
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.0e-14 85.9 356 27.5
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.4e-14 85.5 610 26.1
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.8e-14 83.2 158 37.3
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 6.8e-14 83.2 154 40.3
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 8.8e-14 82.8 567 22.9
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.2e-13 82.4 278 30.2
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.2e-13 82.4 153 40.5
Potri.001G094266 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.0e-13 81.6 110 48.2
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 2.6e-13 81.3 503 26.2
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 3.4e-13 80.9 578 25.4
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.4e-13 80.5 431 24.6
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.7e-13 80.1 610 25.6
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 5.7e-13 80.1 309 28.2
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 5.7e-13 80.1 777 22.1
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 7.5e-13 79.7 693 23.2
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 7.5e-13 79.7 360 27.5
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 9.8e-13 79.3 610 25.6
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-12 79.0 487 23.8
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 1.7e-12 78.6 705 22.4
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.2e-12 78.2 382 25.4
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 2.2e-12 78.2 327 27.8
Ca_24520_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 2.8e-12 77.8 559 23.4
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 8.3e-12 76.3 352 26.4
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.4e-11 75.5 447 26.6
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 1.8e-11 75.1 299 27.1
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.8e-11 75.1 493 24.5
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.4e-11 74.7 574 25.1
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 2.4e-11 74.7 155 35.5
TPR.G6696 Trifolium pratense HOM05D002129 ORTHO05D002188 3.1e-11 74.3 424 25.2
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 4.1e-11 73.9 518 20.7
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 4.1e-11 73.9 478 24.7
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 5.4e-11 73.6 584 22.1
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 7.0e-11 73.2 436 24.1
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.2e-10 72.4 150 36.0
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.6e-10 72.0 519 20.8
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 1.6e-10 72.0 150 34.7
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 1.6e-10 72.0 179 36.3
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.6e-10 72.0 498 24.5
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 1.6e-10 72.0 161 35.4
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 2.0e-10 71.6 153 34.0
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.7e-10 71.2 515 24.1
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.5e-10 70.5 519 20.6
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.3e-09 68.9 304 24.0
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.7e-09 68.6 153 37.3
Phvul.002G296200 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.7e-09 68.6 537 22.2
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 2.2e-09 68.2 363 25.6
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 2.2e-09 68.2 483 23.2
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 3.8e-09 67.4 475 23.2
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 5.0e-09 67.0 247 27.1
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.0e-09 67.0 307 26.7
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 5.0e-09 67.0 260 30.8
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 6.5e-09 66.6 212 30.2
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 6.5e-09 66.6 146 34.9
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 8.5e-09 66.2 493 25.2
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 8.5e-09 66.2 175 34.9
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 1.5e-08 65.5 382 26.4
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.5e-08 65.5 409 24.4
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.5e-08 65.5 392 24.5
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.5e-08 64.7 337 24.9
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 2.5e-08 64.7 667 21.9
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 3.2e-08 64.3 385 24.4
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 9.5e-08 62.8 250 27.2
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 9.5e-08 62.8 435 23.9
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 9.5e-08 62.8 477 24.7
MBI07_g09921_MAGBIO Magnolia biondii HOM05D002129 ORTHO05D002188 9.5e-08 62.8 442 26.7
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.2e-07 62.4 121 35.5
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.1e-07 61.6 481 21.8
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 2.7e-07 61.2 498 24.9
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.7e-07 60.5 143 32.9
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 6.1e-07 60.1 481 24.9
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 1.0e-06 59.3 480 24.0
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 1.4e-06 58.9 200 27.5
Psat0s4440g0080 Pisum sativum HOM05D002129 ORTHO05D002188 1.4e-06 58.9 270 26.3
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 1.8e-06 58.5 161 28.6
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 3.0e-06 57.8 159 28.9
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 5.2e-06 57.0 321 22.4
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 5.2e-06 57.0 442 24.7
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 6.8e-06 56.6 276 25.7


User provided reference genes

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