Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 7.2e-125 451.1 316 100.0
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 1.9e-109 399.8 316 90.8
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 5.6e-101 371.7 317 87.4
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 4.9e-89 332.0 318 80.5
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 3.0e-86 322.8 320 77.8
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 9.6e-85 317.8 322 78.0
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 1.3e-84 317.4 304 79.9
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 3.1e-83 312.8 322 78.0
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 1.1e-80 304.3 321 75.7
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 1.1e-80 304.3 321 75.7
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 2.3e-78 296.6 321 75.7
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 2.3e-70 270.0 332 57.8
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 5.0e-57 225.7 323 64.7
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 6.9e-43 178.7 312 58.7
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 5.0e-41 172.6 260 65.4
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 8.5e-41 171.8 253 68.0
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 7.9e-39 165.2 256 60.5
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 5.1e-38 162.5 271 63.1
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 6.7e-38 162.2 331 54.1
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 4.4e-37 159.5 253 62.5
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.7e-36 157.5 243 65.8
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 1.7e-36 157.5 310 54.2
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 3.7e-36 156.4 282 61.3
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 8.2e-36 155.2 260 60.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.1e-35 154.8 304 56.6
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 2.4e-35 153.7 155 60.6
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 5.3e-35 152.5 256 63.7
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.5e-34 151.0 257 63.4
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 3.5e-34 149.8 276 59.1
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 4.5e-34 149.4 305 56.7
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.0e-33 148.3 285 61.1
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 2.2e-33 147.1 259 62.2
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 8.5e-33 145.2 267 59.9
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 2.5e-32 143.7 256 64.8
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 4.2e-32 142.9 261 60.9
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 5.5e-32 142.5 283 39.6
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 1.2e-31 141.4 218 67.0
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 3.6e-31 139.8 255 62.4
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 6.1e-31 139.0 315 55.2
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 1.4e-30 137.9 268 62.3
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 1.8e-30 137.5 316 54.1
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.3e-30 137.1 262 58.8
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 2.6e-29 133.7 200 47.5
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 5.7e-29 132.5 270 60.4
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 5.7e-29 132.5 218 67.4
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 2.8e-28 130.2 316 55.1
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 4.8e-28 129.4 318 52.5
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 4.8e-28 129.4 264 58.7
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 4.8e-28 129.4 247 59.1
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 6.3e-28 129.0 212 46.2
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 1.8e-27 127.5 255 58.8
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 2.4e-27 127.1 258 58.5
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 4.1e-27 126.3 242 61.6
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 4.1e-27 126.3 146 52.7
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 5.3e-27 125.9 304 56.2
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 7.0e-27 125.6 159 52.8
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 7.0e-27 125.6 159 52.8
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 7.0e-27 125.6 159 52.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.6e-26 123.6 85 75.3
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 1.0e-25 121.7 270 58.5
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.7e-25 120.9 249 62.2
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 2.2e-25 120.6 322 52.5
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 2.9e-25 120.2 251 59.4
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 6.5e-25 119.0 273 54.9
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 6.5e-25 119.0 273 54.9
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 6.5e-25 119.0 165 45.5
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.9e-24 117.5 201 68.7
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 2.5e-24 117.1 136 53.7
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 5.5e-24 115.9 276 59.1
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 5.5e-24 115.9 185 47.6
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 9.4e-24 115.2 151 55.6
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 2.1e-23 114.0 282 53.9
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 2.7e-23 113.6 138 49.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 6.1e-23 112.5 272 55.1
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 1.0e-22 111.7 124 57.3
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 2.3e-22 110.5 151 45.7
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 3.0e-22 110.2 282 53.9
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 5.2e-22 109.4 210 61.9
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 6.8e-22 109.0 142 47.2
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 1.2e-21 108.2 296 50.7
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.2e-21 108.2 193 47.2
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 7.5e-21 105.5 246 57.3
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 9.8e-21 105.1 120 54.2
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 1.3e-20 104.8 288 53.1
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.3e-20 104.8 280 55.4
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 2.2e-20 104.0 124 53.2
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 2.8e-20 103.6 120 54.2
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 3.7e-20 103.2 190 67.9
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 8.3e-20 102.1 266 54.1
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 1.4e-19 101.3 135 46.7
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 5.4e-19 99.4 325 49.5
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 1.3e-17 94.7 315 49.8
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 2.2e-17 94.0 117 53.0
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 5.0e-17 92.8 137 46.7
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 5.0e-17 92.8 137 48.2
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 6.5e-17 92.4 246 52.0
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-16 90.9 127 48.0
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 3.6e-15 86.7 155 35.5
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 2.0e-13 80.9 165 41.2
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 7.5e-13 79.0 174 37.9
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 2.2e-12 77.4 107 43.0
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 2.8e-12 77.0 106 41.5
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 3.7e-12 76.6 85 47.1
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 8.3e-12 75.5 106 41.5
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 1.4e-11 74.7 107 42.1
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 1.4e-11 74.7 107 41.1
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 1.4e-11 74.7 107 42.1
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.8e-11 74.3 109 38.5
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 2.4e-11 73.9 106 41.5
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 2.4e-11 73.9 138 37.7
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 3.1e-11 73.6 106 40.6
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 3.1e-11 73.6 84 45.2
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 3.1e-11 73.6 106 41.5
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 4.1e-11 73.2 87 43.7
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 4.1e-11 73.2 107 39.3
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 4.1e-11 73.2 106 40.6
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 7.0e-11 72.4 80 45.0
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 7.0e-11 72.4 85 44.7
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 9.1e-11 72.0 98 41.8
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 9.1e-11 72.0 97 40.2
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 1.2e-10 71.6 106 38.7
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.2e-10 71.6 106 39.6
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 1.2e-10 71.6 106 39.6
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.2e-10 71.6 98 42.9
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 2.0e-10 70.9 98 42.9
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 2.0e-10 70.9 98 40.8
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 2.0e-10 70.9 98 41.8
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.7e-10 70.5 147 34.7
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 2.7e-10 70.5 159 67.9
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 3.5e-10 70.1 81 46.9
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 4.5e-10 69.7 105 41.0
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 5.9e-10 69.3 85 44.7
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 7.7e-10 68.9 88 40.9
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 7.7e-10 68.9 94 39.4
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 7.7e-10 68.9 94 39.4
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.0e-09 68.6 85 41.2
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 1.7e-09 67.8 106 37.7
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 1.7e-09 67.8 81 43.2
ECA080G0002 Erigeron canadensis HOM05D000340 ORTHO05D000821 2.3e-09 67.4 38 84.2
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-09 67.0 99 40.4
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 2.9e-09 67.0 99 40.4
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 2.9e-09 67.0 102 38.2
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 3.8e-09 66.6 85 42.4
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 6.6e-09 65.9 158 33.5
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 6.6e-09 65.9 99 40.4
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 6.6e-09 65.9 101 37.6
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 6.6e-09 65.9 78 46.2
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 1.5e-08 64.7 149 31.5
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 1.5e-08 64.7 80 42.5
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 2.5e-08 63.9 77 42.9
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 2.5e-08 63.9 77 42.9
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 2.5e-08 63.9 97 39.2
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 2.5e-08 63.9 80 42.5
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 2.5e-08 63.9 107 33.6
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 4.2e-08 63.2 98 35.7
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 5.6e-08 62.8 71 43.7
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 7.2e-08 62.4 78 44.9
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 7.2e-08 62.4 80 41.2
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 7.2e-08 62.4 96 42.7
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 9.5e-08 62.0 99 38.4
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 9.5e-08 62.0 185 38.9
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 1.2e-07 61.6 175 32.6
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.2e-07 61.6 96 38.5
A04p13070 Brassica napus HOM05D007469 ORTHO05D026517 2.1e-07 60.8 30 90.0
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 2.8e-07 60.5 95 37.9
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 2.8e-07 60.5 99 37.4
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 2.8e-07 60.5 79 43.0
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 3.6e-07 60.1 96 39.6
Ah.04g155230 Amaranthus hybridus HOM05D007469 ORTHO05D026517 4.7e-07 59.7 40 65.0
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 4.7e-07 59.7 85 41.2
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 6.1e-07 59.3 80 42.5
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 1.0e-06 58.5 72 41.7
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 1.0e-06 58.5 101 35.6
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.4e-06 58.2 98 35.7
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.4e-06 58.2 102 35.3
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 1.4e-06 58.2 79 38.0
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 1.8e-06 57.8 77 42.9
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 3.0e-06 57.0 142 32.4
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 4.0e-06 56.6 74 44.6
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 6.8e-06 55.8 101 34.7
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 8.9e-06 55.5 86 36.0
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 8.9e-06 55.5 86 36.0


User provided reference genes

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