Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G39540 Arabidopsis thaliana HOM05D000171 ORTHO05D011694 9.2e-94 347.1 197 100.0
AT1G50870 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.1e-33 146.0 79 89.9
AT3G55210 Arabidopsis thaliana HOM05D000010 ORTHO05D011694 7.2e-30 134.8 107 75.7
CARHR040900 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.7e-21 105.5 79 62.0
AL7G45620 Arabidopsis lyrata HOM05D027893 ORTHO05D011694 1.1e-14 84.3 93 52.7
Thhalv10027439m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.5e-14 83.2 72 59.7
Sp1g34800 Schrenkiella parvula HOM05D000171 ORTHO05D000101 5.5e-14 82.0 87 49.4
AL5G26610 Arabidopsis lyrata HOM05D000010 ORTHO05D011694 2.7e-13 79.7 72 59.7
AT1G47790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-12 77.4 74 55.4
BraA07t27916Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-12 77.4 72 52.8
BcaC06g36593 Brassica carinata HOM05D000171 ORTHO05D000101 1.8e-12 77.0 76 52.6
C07p02550 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-12 77.0 76 52.6
BolC7t40653H Brassica oleracea HOM05D000171 ORTHO05D000101 1.8e-12 77.0 76 52.6
BcaB07g33527 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-10 70.9 114 38.6
Sp1g37610 Schrenkiella parvula HOM05D000171 ORTHO05D000101 2.2e-10 70.1 71 47.9
BcaC08g43262 Brassica carinata HOM05D000171 ORTHO05D000101 2.8e-10 69.7 73 50.7
Thhalv10017831m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.8e-10 69.7 77 49.4
AL5G26630 Arabidopsis lyrata HOM05D000010 ORTHO05D011694 3.7e-10 69.3 71 56.3
BraA06t26306Z Brassica rapa HOM05D000171 ORTHO05D000101 3.7e-10 69.3 73 46.6
Carub.0003s0941 Capsella rubella HOM05D000171 ORTHO05D000101 6.3e-10 68.6 84 45.2
AL1G58610 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.2e-10 68.2 68 54.4
BcaC06g36300 Brassica carinata HOM05D000088 ORTHO05D000933 8.2e-10 68.2 75 49.3
C07p05620 Brassica napus HOM05D000171 ORTHO05D000101 8.2e-10 68.2 75 49.3
BolC7t40961H Brassica oleracea HOM05D000171 ORTHO05D000101 8.2e-10 68.2 75 49.3
Thhalv10012114m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.2e-10 68.2 69 56.5
BraA05t21830Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-09 67.4 77 46.8
BraA07t28132Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-09 67.4 72 51.4
AT1G47765 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.4e-09 66.6 72 50.0
A06p02840 Brassica napus HOM05D000171 ORTHO05D000101 2.4e-09 66.6 63 55.6
BraA06t23491Z Brassica rapa HOM05D000171 ORTHO05D000101 2.4e-09 66.6 63 55.6
Thhalv10012065m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.4e-09 66.6 72 45.8
Thhalv10012180m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.4e-09 66.6 70 51.4
A09p16070 Brassica napus HOM05D000171 ORTHO05D000101 3.1e-09 66.2 69 46.4
BraA09t37243Z Brassica rapa HOM05D000171 ORTHO05D000101 3.1e-09 66.2 69 46.4
CARHR040920 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.1e-09 66.2 71 49.3
C03p58590 Brassica napus HOM05D000171 ORTHO05D000101 4.1e-09 65.9 73 42.5
BolC3t18120H Brassica oleracea HOM05D000171 ORTHO05D000101 4.1e-09 65.9 73 42.5
C06p06060 Brassica napus HOM05D000171 ORTHO05D000101 5.3e-09 65.5 70 50.0
Thhalv10003313m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.3e-09 65.5 71 49.3
Thhalv10012345m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.0e-09 65.1 68 51.5
AL6G29130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-08 64.3 69 47.8
C05p44910 Brassica napus HOM05D000171 ORTHO05D000101 1.2e-08 64.3 73 47.9
BolC6t35719H Brassica oleracea HOM05D000171 ORTHO05D000101 1.2e-08 64.3 70 48.6
Thhalv10011966m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-08 64.3 76 48.7
A05p29800 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-08 63.9 77 45.5
A09p03250 Brassica napus HOM05D000482 ORTHO05D000349 1.6e-08 63.9 68 50.0
BolC5t33215H Brassica oleracea HOM05D000171 ORTHO05D000101 1.6e-08 63.9 73 47.9
BraA09t35963Z Brassica rapa HOM05D000482 ORTHO05D000349 1.6e-08 63.9 68 50.0
BcaB06g26046 Brassica carinata HOM05D000171 ORTHO05D000101 2.0e-08 63.5 74 43.2
Thhalv10029264m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-08 63.5 68 55.9
AL2G17240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.6e-08 63.2 74 44.6
Carub.0004s0106 Capsella rubella HOM05D000171 ORTHO05D000101 3.5e-08 62.8 79 39.2
Thhalv10011993m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.5e-08 62.8 68 47.1
BcaB02g08397 Brassica carinata HOM05D000171 ORTHO05D000101 4.5e-08 62.4 81 44.4
BcaB07g33525 Brassica carinata HOM05D000171 ORTHO05D000101 4.5e-08 62.4 84 42.9
CARHR037410 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.5e-08 62.4 69 46.4
AL1G54620 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.9e-08 62.0 73 46.6
BcaB07g33529 Brassica carinata HOM05D000171 ORTHO05D000101 5.9e-08 62.0 69 49.3
Thhalv10003356m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.9e-08 62.0 63 55.6
Carub.0004s1097 Capsella rubella HOM05D000171 ORTHO05D000101 7.7e-08 61.6 69 42.0
Thhalv10003413m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.7e-08 61.6 63 50.8
Thhalv10009934m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.7e-08 61.6 69 46.4
AT3G10240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.0e-07 61.2 73 49.3
A06p31800 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-07 60.8 75 45.3
BraA06t26112Z Brassica rapa HOM05D000171 ORTHO05D000101 1.3e-07 60.8 75 45.3
Thhalv10000202m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.3e-07 60.8 69 46.4
AT5G39690 Arabidopsis thaliana HOM05D027893 ORTHO05D011694 1.7e-07 60.5 34 82.4
BolC4t26697H Brassica oleracea HOM05D000171 ORTHO05D000101 1.7e-07 60.5 112 33.9
Carub.0001s3982 Capsella rubella HOM05D000171 ORTHO05D000101 2.2e-07 60.1 71 52.1
AL3G17170 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.9e-07 59.7 69 42.0
CARHR037710 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.9e-07 59.7 110 33.6
A03p18390 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-07 59.3 100 39.0
A04p16510 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-07 59.3 70 42.9
BraA03t11102Z Brassica rapa HOM05D000171 ORTHO05D000101 3.8e-07 59.3 100 39.0
BraA04t17287Z Brassica rapa HOM05D000171 ORTHO05D000101 3.8e-07 59.3 70 42.9
Thhalv10002973m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.8e-07 59.3 71 43.7
AL4G11220 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.0e-07 58.9 74 39.2
CARHR037850 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.0e-07 58.9 73 45.2
Sp1g37770 Schrenkiella parvula HOM05D000171 ORTHO05D000101 5.0e-07 58.9 77 42.9
BolC7t40962H Brassica oleracea HOM05D000171 ORTHO05D000101 6.5e-07 58.5 69 44.9
Carub.0001s3672 Capsella rubella HOM05D000171 ORTHO05D000101 6.5e-07 58.5 75 44.0
AL1G54130 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.5e-07 58.2 73 50.7
Thhalv10012281m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.5e-07 58.2 50 62.0
Thhalv10027600m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.5e-07 58.2 77 42.9
BcaB07g33521 Brassica carinata HOM05D000171 ORTHO05D000101 1.1e-06 57.8 74 43.2
A04p16520 Brassica napus HOM05D000171 ORTHO05D000101 1.1e-06 57.8 69 36.2
BraA04t17288Z Brassica rapa HOM05D000171 ORTHO05D000101 1.1e-06 57.8 69 36.2
AL1G66270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-06 57.4 74 41.9
AL3G53950 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-06 57.4 68 41.2
C03p21480 Brassica napus HOM05D000171 ORTHO05D000101 1.9e-06 57.0 100 38.0
BolC3t14534H Brassica oleracea HOM05D000171 ORTHO05D000101 1.9e-06 57.0 100 38.0
CARHR127720 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.9e-06 57.0 89 37.1
AL4G33150 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.5e-06 56.6 69 43.5
AL5G43600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.5e-06 56.6 80 38.8
AT3G61340 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.5e-06 56.6 80 36.2
AT4G21240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.2e-06 56.2 70 41.4
Carub.0004s0102 Capsella rubella HOM05D000171 ORTHO05D000101 3.2e-06 56.2 81 34.6
AT1G47730 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.2e-06 55.8 78 41.0
CARHR037720 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.2e-06 55.8 71 43.7
Thhalv10000190m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.2e-06 55.8 71 43.7
AT4G38870 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-06 55.5 101 38.6
BraA09t41137Z Brassica rapa HOM05D000171 ORTHO05D000101 5.5e-06 55.5 71 46.5
Thhalv10015870m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.5e-06 55.5 69 43.5
Carub.0004s0535 Capsella rubella HOM05D000171 ORTHO05D000101 7.2e-06 55.1 70 40.0
Thhalv10011008m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.2e-06 55.1 79 44.3
Thhalv10029328m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.2e-06 55.1 70 38.6
AL4G11240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.4e-06 54.7 75 44.0
THA.LOC104799108 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 9.4e-06 54.7 66 45.5


User provided reference genes

Program Settings