Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.9e-130 469.2 231 100.0
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.5e-116 422.9 230 91.3
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.8e-112 409.5 227 89.9
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.7e-104 380.9 236 83.1
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.3e-102 376.7 234 79.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.7e-102 376.3 234 79.9
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-102 376.3 234 79.9
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.7e-102 375.2 234 79.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-101 373.2 234 79.5
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.1e-101 372.1 233 79.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-99 366.3 227 79.7
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-98 363.2 232 78.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.8e-93 346.3 234 73.1
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.4e-93 345.9 234 73.5
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.5e-92 341.7 205 80.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.0e-91 338.2 230 71.3
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-90 336.7 230 70.9
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.5e-90 335.9 205 79.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.5e-90 335.9 230 71.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.5e-90 335.9 230 71.3
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.2e-90 335.1 221 73.3
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 7.2e-90 334.3 234 73.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.6e-89 333.2 230 70.9
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.2e-86 322.8 205 76.6
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 5.7e-79 298.1 223 67.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 7.0e-77 291.2 183 78.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.3e-75 286.2 177 77.4
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 8.6e-75 284.3 234 64.5
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 6.8e-72 274.6 209 65.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.6e-71 272.7 200 65.5
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.3e-70 270.4 218 61.9
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.4e-69 266.2 234 58.1
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.2e-69 265.8 193 66.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 9.2e-69 264.2 211 59.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.2e-68 263.8 193 63.7
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.7e-68 262.7 197 63.5
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.7e-68 262.7 213 61.5
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.0e-67 259.2 196 63.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.0e-67 259.2 196 63.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 3.0e-67 259.2 215 58.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.0e-67 259.2 218 60.1
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.0e-67 259.2 218 60.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 8.6e-67 257.7 225 57.3
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 8.6e-67 257.7 213 59.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 8.6e-67 257.7 213 59.2
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 5.6e-66 255.0 203 59.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.6e-66 255.0 194 63.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 7.3e-66 254.6 206 57.8
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 2.8e-65 252.7 216 55.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.7e-65 251.9 207 59.4
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 4.7e-65 251.9 204 57.8
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 4.0e-64 248.8 191 61.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 4.0e-64 248.8 193 62.2
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 8.9e-64 247.7 192 61.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.6e-63 246.1 223 54.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.4e-63 245.7 222 54.5
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.8e-63 245.0 194 62.9
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-62 243.0 234 56.8
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.9e-62 241.9 192 58.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 4.9e-62 241.9 192 58.3
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.4e-61 240.4 214 55.1
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.9e-61 240.0 189 59.3
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.2e-61 239.2 215 53.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 9.2e-61 237.7 189 60.8
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 7.8e-60 234.6 174 63.2
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.6e-59 231.1 203 55.2
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-58 230.3 191 55.0
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.6e-58 228.4 195 56.4
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.8e-57 226.1 221 51.1
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 8.1e-57 224.6 208 53.4
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.1e-56 224.2 207 53.1
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.8e-56 223.4 190 56.3
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 8.9e-56 221.1 190 55.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 2.0e-55 219.9 226 49.6
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 4.1e-53 212.2 202 53.0
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 5.4e-53 211.8 218 48.2
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 7.1e-53 211.5 162 59.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.1e-52 209.9 169 58.6
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.8e-52 208.0 212 49.5
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 4.3e-50 202.2 144 63.2
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 4.3e-50 202.2 215 47.4
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.3e-50 202.2 214 48.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-49 200.7 195 49.2
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-49 200.7 215 46.5
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.6e-49 200.3 176 56.2
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.6e-49 199.1 212 47.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.1e-48 196.1 195 45.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.0e-48 195.7 202 48.5
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 6.8e-48 194.9 202 49.0
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-47 194.1 157 56.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 7.6e-47 191.4 215 48.4
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 9.2e-45 184.5 151 57.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-44 183.7 147 55.1
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-44 183.7 194 46.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.7e-44 183.0 147 55.1
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 8.7e-43 177.9 191 46.6
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-42 177.2 192 42.2
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.5e-42 176.4 203 40.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 5.6e-42 175.3 193 42.5
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.2e-41 174.1 203 40.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.2e-41 174.1 197 41.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 3.6e-41 172.6 197 41.6
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.6e-41 172.6 221 42.1
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 6.2e-41 171.8 209 44.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.4e-40 170.6 120 71.7
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-40 170.2 140 55.7
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 3.1e-40 169.5 196 41.3
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 4.0e-40 169.1 222 37.8
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.9e-40 168.3 140 53.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 9.0e-40 167.9 225 39.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-39 167.5 194 43.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 4.4e-39 165.6 225 38.2
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.8e-39 165.2 190 41.6
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.8e-39 165.2 197 41.6
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.8e-38 162.5 184 41.8
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.8e-38 162.5 200 39.5
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.4e-38 161.4 185 45.4
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.2e-37 159.5 186 42.5
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.2e-37 159.5 197 39.6
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.2e-37 159.5 159 45.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 7.1e-37 158.3 187 41.7
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.2e-36 157.5 217 38.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.1e-36 156.8 217 35.9
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.7e-36 156.4 195 39.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.6e-36 155.6 185 43.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 4.6e-36 155.6 170 46.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.0e-36 155.2 183 41.0
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.5e-34 149.8 166 48.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.3e-34 149.4 204 37.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 5.6e-34 148.7 189 37.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 7.3e-34 148.3 141 46.8
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.3e-33 147.5 190 37.9
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 8.1e-33 144.8 140 46.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.8e-32 143.7 196 39.3
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 6.9e-32 141.7 212 36.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.2e-31 141.0 189 35.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.6e-31 139.8 200 36.0
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.5e-31 139.0 209 34.0
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.8e-31 138.7 212 36.3
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 5.8e-31 138.7 186 37.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-30 137.5 185 38.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.9e-30 135.6 128 53.1
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-28 131.0 183 36.6
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 4.3e-26 122.5 174 37.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.3e-26 122.5 148 41.2
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 2.4e-24 116.7 191 33.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.4e-24 116.7 195 32.8
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.1e-24 116.3 214 31.8
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.2e-21 106.3 115 50.4
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.2e-21 105.9 115 50.4
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.8e-19 100.5 66 75.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.8e-19 100.5 115 40.0
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 6.7e-19 98.6 79 58.2
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 8.7e-19 98.2 99 42.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.1e-17 93.6 86 57.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 4.9e-14 82.4 74 59.5
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-13 79.7 74 45.9
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 5.5e-13 79.0 104 44.2
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.0e-11 74.7 193 25.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.0e-11 73.2 175 26.3
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 3.9e-11 72.8 66 56.1
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 4.8e-09 65.9 121 32.2
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 8.2e-09 65.1 50 62.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.1e-08 64.7 248 25.0
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 6.9e-08 62.0 168 26.8


User provided reference genes

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