Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 3.4e-175 618.2 310 100.0
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 7.7e-172 607.1 310 98.1
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 7.7e-172 607.1 310 97.4
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 8.0e-169 597.0 310 96.5
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 1.2e-167 593.2 308 96.1
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.2e-167 593.2 310 95.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.0e-167 592.4 310 95.8
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 3.4e-167 591.7 310 95.5
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 3.4e-167 591.7 308 95.8
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 2.2e-166 589.0 310 94.8
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 4.9e-166 587.8 311 95.5
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 8.3e-166 587.0 309 95.5
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 7.3e-162 573.9 310 91.6
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 6.8e-160 567.4 305 93.1
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 2.6e-151 538.9 307 86.3
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 9.8e-151 537.0 310 86.8
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.7e-150 536.2 307 87.3
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 9.2e-149 530.4 307 85.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.2e-148 530.0 310 85.5
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 2.1e-148 529.3 310 85.2
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 3.5e-148 528.5 307 84.7
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 3.5e-148 528.5 310 84.8
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.0e-147 526.9 307 83.7
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 3.0e-147 525.4 307 83.7
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 3.9e-147 525.0 310 83.9
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 3.9e-147 525.0 310 83.9
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 6.6e-147 524.2 307 84.0
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 8.6e-147 523.9 307 84.7
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 8.6e-147 523.9 307 84.7
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 8.6e-147 523.9 310 84.2
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.1e-146 523.5 307 83.4
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.9e-146 522.7 308 83.4
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.9e-146 522.7 305 84.3
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 3.3e-146 521.9 307 84.4
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 5.6e-146 521.2 307 84.4
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 7.3e-146 520.8 307 83.7
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 1.2e-145 520.0 310 83.2
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 2.1e-145 519.2 307 83.4
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.8e-145 518.8 310 82.3
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 2.8e-145 518.8 310 82.6
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 3.6e-145 518.5 307 84.0
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 4.7e-145 518.1 310 82.6
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 4.7e-145 518.1 307 83.4
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 6.2e-145 517.7 307 84.4
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.1e-144 516.9 310 82.6
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.4e-144 516.5 307 82.7
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.4e-144 516.5 310 82.6
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 2.3e-144 515.8 319 80.9
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 2.3e-144 515.8 320 81.2
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 5.2e-144 514.6 307 81.8
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 6.8e-144 514.2 306 82.0
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.2e-143 513.5 307 82.4
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.5e-143 513.1 305 83.3
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.6e-143 512.3 310 81.6
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 3.4e-143 511.9 297 86.2
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 1.3e-142 510.0 318 80.2
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.3e-142 510.0 332 77.7
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 4.9e-142 508.1 312 81.4
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.9e-141 506.1 310 80.3
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 3.2e-141 505.4 309 81.9
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 9.2e-141 503.8 338 77.8
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 6.6e-139 497.7 308 79.2
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 9.6e-138 493.8 310 78.4
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 1.4e-136 490.0 300 81.3
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.2e-136 488.0 371 69.5
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 6.9e-136 487.6 297 80.5
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 1.5e-135 486.5 307 79.8
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 3.8e-134 481.9 307 78.8
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.9e-133 479.6 307 78.5
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.5e-130 469.9 310 77.1
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 9.6e-130 467.2 310 77.7
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 2.4e-128 462.6 329 72.9
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 2.6e-127 459.1 304 75.3
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 5.8e-127 458.0 299 76.6
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 7.6e-127 457.6 342 69.9
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 6.4e-126 454.5 324 73.5
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 1.6e-124 449.9 263 85.6
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 6.0e-124 448.0 351 65.2
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 2.3e-123 446.0 322 71.4
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 3.9e-123 445.3 497 53.3
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 1.9e-122 443.0 259 83.8
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.9e-122 443.0 314 73.6
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.3e-122 441.8 321 72.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.8e-121 439.1 308 72.4
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 4.9e-118 428.3 419 57.3
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 8.4e-118 427.6 287 75.6
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 7.1e-117 424.5 309 73.1
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.2e-116 423.7 300 70.7
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.1e-114 417.2 305 68.9
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 9.6e-114 414.1 260 80.8
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.5e-111 405.2 295 67.5
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 5.8e-111 404.8 310 68.7
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 2.9e-110 402.5 293 67.6
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 8.4e-110 401.0 227 86.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 7.1e-109 397.9 259 76.8
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 2.1e-108 396.4 243 81.9
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 7.9e-108 394.4 297 70.7
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.0e-107 394.0 252 77.8
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 6.9e-104 381.3 294 65.3
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.9e-99 365.5 255 72.9
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 6.7e-99 364.8 261 69.0
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 3.7e-97 359.0 219 81.3
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.5e-95 353.6 244 73.8
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.7e-89 333.6 305 59.3
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 8.2e-89 331.3 209 77.5
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.2e-87 327.4 299 55.9
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 1.5e-87 327.0 226 69.5
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.3e-86 323.9 310 58.4
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.3e-73 280.8 184 77.2
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.0e-71 273.5 302 51.0
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.7e-70 270.4 177 76.8
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 4.8e-65 252.3 193 68.4
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 3.5e-63 246.1 157 75.2
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.9e-62 243.0 158 78.5
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 4.2e-61 239.2 157 75.2
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 3.6e-60 236.1 490 35.3
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 9.8e-58 228.0 120 90.0
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.9e-55 218.8 118 87.3
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 6.6e-54 215.3 143 77.6
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.7e-47 193.4 228 52.2
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.9e-45 187.2 113 78.8
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.7e-41 174.1 270 36.3
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 6.2e-36 155.6 99 75.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 3.1e-35 153.3 287 34.5
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 5.2e-27 125.9 66 89.4
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.8e-25 119.8 326 27.0
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-24 117.5 61 91.8
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.6e-23 114.4 59 91.5
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 6.0e-23 112.5 59 89.8
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 5.1e-22 109.4 63 81.0
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 4.3e-21 106.3 55 90.9
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.6e-20 104.4 70 68.6
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 7.6e-18 95.5 60 80.0
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 4.3e-13 79.7 60 65.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 3.1e-11 73.6 43 79.1
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.0e-10 70.9 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 2.1e-07 60.8 55 54.5
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.8e-06 57.8 104 34.6
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 6.7e-06 55.8 104 33.7


User provided reference genes

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