Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 1.6e-160 569.3 285 100.0
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 1.2e-41 174.5 166 59.6
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 6.1e-38 162.2 161 54.7
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 1.7e-35 154.1 190 44.2
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 1.2e-30 137.9 323 34.1
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 3.3e-28 129.8 317 34.7
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 1.1e-26 124.8 319 32.9
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 3.1e-26 123.2 319 32.6
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 3.1e-26 123.2 319 32.6
Actinidia02801 Actinidia chinensis HOM05D007456 ORTHO05D009411 5.3e-26 122.5 216 36.1
AT3G42560 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 5.9e-25 119.0 107 61.7
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.1e-23 114.8 185 40.0
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 8.0e-22 108.6 87 71.3
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 8.8e-21 105.1 74 70.3
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 5.3e-18 95.9 181 36.5
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 2.0e-17 94.0 80 65.0
Cpa.g.sc252.21 Carica papaya HOM05D007456 ORTHO05D009411 5.9e-17 92.4 51 84.3
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 2.9e-16 90.1 308 28.6
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 2.9e-16 90.1 308 28.6
SEGI_07154 Sequoiadendron giganteum HOM05D007456 ORTHO05D009411 3.8e-16 89.7 82 52.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 6.5e-16 89.0 136 40.4
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 9.4e-15 85.1 51 76.5
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.6e-14 84.3 53 73.6
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 3.6e-14 83.2 145 33.8
Aqoxy245s001 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 8.0e-14 82.0 74 50.0
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 8.0e-14 82.0 68 58.8
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 3.0e-13 80.1 90 55.6
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 3.4e-12 76.6 141 36.2
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.2e-11 73.9 95 45.3
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 2.2e-11 73.9 46 69.6
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 3.7e-11 73.2 105 39.0
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 6.3e-11 72.4 141 29.8
COL.COLO4_08908 Corchorus olitorius HOM05D007456 ORTHO05D009411 1.1e-10 71.6 42 71.4
Zm00001eb011030 Zea mays HOM05D007456 ORTHO05D009411 1.4e-10 71.2 46 67.4
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.8e-10 70.9 137 35.0
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.8e-10 70.9 81 45.7
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.6e-09 67.8 238 23.9
Haze_10217 Corylus avellana HOM05D001121 ORTHO05D001256 3.5e-09 66.6 168 28.0
Cfa004621 Carpinus fangiana HOM05D003056 ORTHO05D003422 4.5e-09 66.2 168 28.0
MD05G1227700 Malus domestica HOM05D000001 ORTHO05D000003 5.9e-09 65.9 152 28.3
CANSAT54G2425 Cannabis sativa HOM05D000001 ORTHO05D000003 7.7e-09 65.5 270 23.7
MBI13_g23884_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.0e-08 65.1 38 76.3
MELO3C018506.2 Cucumis melo HOM05D003056 ORTHO05D003422 1.7e-08 64.3 152 28.3
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.2e-08 63.9 76 42.1
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 2.9e-08 63.5 182 26.9
Thecc.05G088500 Theobroma cacao HOM05D000001 ORTHO05D000003 3.8e-08 63.2 198 22.2
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.0e-08 62.8 165 24.2
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.0e-08 62.8 169 26.0
Solyc01g107320.3 Solanum lycopersicum HOM05D003056 ORTHO05D003422 5.0e-08 62.8 168 26.8
Sopen01g049560 Solanum pennellii HOM05D003056 ORTHO05D003422 5.0e-08 62.8 168 27.4
PGSC0003DMG400025851 Solanum tuberosum HOM05D003056 ORTHO05D003422 5.0e-08 62.8 168 27.4
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 6.5e-08 62.4 203 26.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.5e-08 62.4 143 24.5
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 6.5e-08 62.4 143 24.5
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 6.5e-08 62.4 134 32.8
Sed0000805 Sechium edule HOM05D003056 ORTHO05D003422 6.5e-08 62.4 102 31.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 8.5e-08 62.0 144 27.8
C01p47730 Brassica napus HOM05D010856 ORTHO05D013526 8.5e-08 62.0 217 28.1
C01p47760 Brassica napus HOM05D010856 ORTHO05D013526 8.5e-08 62.0 217 28.1
CiPaw.05G014700 Carya illinoinensis HOM05D003056 ORTHO05D003422 8.5e-08 62.0 168 28.0
Nitab4.5_0002023g0010 Nicotiana tabacum HOM05D007251 ORTHO05D009266 8.5e-08 62.0 285 24.9
arahy.Tifrunner.gnm1.ann1.6P0CZ8 Arachis hypogaea HOM05D000072 ORTHO05D010419 1.5e-07 61.2 142 29.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.5e-07 61.2 226 21.7
CAN.G1280.29 Capsicum annuum HOM05D000001 ORTHO05D009229 1.9e-07 60.8 134 28.4
ClCG02G006650 Citrullus lanatus HOM05D003056 ORTHO05D003422 1.9e-07 60.8 102 30.4
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.9e-07 60.8 73 41.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.9e-07 60.8 143 24.5
AL3G13340 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.5e-07 60.5 163 29.4
CAN.G606.38 Capsicum annuum HOM05D003056 ORTHO05D003422 2.5e-07 60.5 168 25.6
Manes.10G074400 Manihot esculenta HOM05D003056 ORTHO05D003422 2.5e-07 60.5 168 25.0
Oeu024271.1 Olea europaea HOM05D000001 ORTHO05D000003 2.5e-07 60.5 196 25.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.5e-07 60.5 110 30.0
Atru.chr5.2421 Acer truncatum HOM05D003056 ORTHO05D003422 3.2e-07 60.1 188 26.1
Ca_03399_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009790 3.2e-07 60.1 173 22.5
CsaV3_7G007980 Cucumis sativus L. HOM05D003056 ORTHO05D003422 3.2e-07 60.1 102 31.4
Manes.10G084100 Manihot esculenta HOM05D000001 ORTHO05D000003 3.2e-07 60.1 169 26.0
Solyc06g009620.1 Solanum lycopersicum HOM05D000001 ORTHO05D009229 3.2e-07 60.1 134 28.4
PGSC0003DMG400007300 Solanum tuberosum HOM05D000001 ORTHO05D009229 3.2e-07 60.1 134 28.4
arahy.Tifrunner.gnm1.ann1.YUWP8F Arachis hypogaea HOM05D000072 ORTHO05D000026 4.2e-07 59.7 142 28.9
Duzib132G1008 Durio zibethinus HOM05D003056 ORTHO05D003422 4.2e-07 59.7 173 25.4
Glyma.04G155800 Glycine max HOM05D006258 ORTHO05D007961 4.2e-07 59.7 108 26.9
MD12G1260100 Malus domestica HOM05D000001 ORTHO05D010091 4.2e-07 59.7 211 23.7
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 4.2e-07 59.7 168 28.6
Rhsim02G0130700 Rhododendron simsii HOM05D007456 ORTHO05D009411 4.2e-07 59.7 35 77.1
SEGI_21145 Sequoiadendron giganteum HOM05D000300 ORTHO05D000383 4.2e-07 59.7 217 22.1
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 5.5e-07 59.3 134 26.1
Sopen06g004250 Solanum pennellii HOM05D000001 ORTHO05D009229 5.5e-07 59.3 134 28.4
COL.COLO4_32549 Corchorus olitorius HOM05D003056 ORTHO05D003422 7.2e-07 58.9 177 24.9
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 7.2e-07 58.9 200 26.0
Medtr7g079860 Medicago truncatula HOM05D000001 ORTHO05D010091 7.2e-07 58.9 259 23.2
Nitab4.5_0000502g0130 Nicotiana tabacum HOM05D007251 ORTHO05D009266 7.2e-07 58.9 258 24.8
Peaxi162Scf00058g00266 Petunia axillaris HOM05D000001 ORTHO05D009229 7.2e-07 58.9 134 26.1
Actinidia34380 Actinidia chinensis HOM05D003056 ORTHO05D003422 9.4e-07 58.5 163 24.5
CAN.G908.8 Capsicum annuum HOM05D007251 ORTHO05D009266 9.4e-07 58.5 258 24.4
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 9.4e-07 58.5 130 33.1
GSVIVG01013772001 Vitis vinifera HOM05D000037 ORTHO05D000648 9.4e-07 58.5 134 26.1
A05p42810 Brassica napus HOM05D000001 ORTHO05D010860 1.2e-06 58.2 181 23.2
BraA05t22971Z Brassica rapa HOM05D000001 ORTHO05D010860 1.2e-06 58.2 181 23.2
Cc03_g16060 Coffea canephora HOM05D000001 ORTHO05D000003 1.2e-06 58.2 167 24.0
Thhalv10020027m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 1.2e-06 58.2 163 28.8
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.2e-06 58.2 110 30.0
Aa31LG7G4630 Aethionema arabicum HOM05D000001 ORTHO05D009837 1.6e-06 57.8 151 25.2
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 1.6e-06 57.8 152 21.7
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.6e-06 57.8 201 22.4
Oeu018668.1 Olea europaea HOM05D007456 ORTHO05D009411 1.6e-06 57.8 37 56.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.6e-06 57.8 210 25.2
Sp3g02560 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.6e-06 57.8 163 26.4
Thecc.02G112900 Theobroma cacao HOM05D003056 ORTHO05D003422 1.6e-06 57.8 173 23.7
Aa31LG11G8860 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.1e-06 57.4 221 21.7
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 2.1e-06 57.4 154 22.1
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.1e-06 57.4 46 58.7
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.1e-06 57.4 245 23.3
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 2.1e-06 57.4 203 22.2
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 2.1e-06 57.4 172 23.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 2.1e-06 57.4 143 22.4
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.7e-06 57.0 104 30.8
CSS0045358 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010091 2.7e-06 57.0 202 21.3
CANSAT25G1867 Cannabis sativa HOM05D003056 ORTHO05D003422 2.7e-06 57.0 110 29.1
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.7e-06 57.0 170 27.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.7e-06 57.0 135 31.1
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 2.7e-06 57.0 196 23.5
Nitab4.5_0005486g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.7e-06 57.0 305 22.0
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 2.7e-06 57.0 173 23.1
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 2.7e-06 57.0 172 23.8
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.7e-06 57.0 165 24.2
AL1G27600 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 3.6e-06 56.6 212 24.1
CsaV3_2G008490 Cucumis sativus L. HOM05D003056 ORTHO05D003422 3.6e-06 56.6 186 23.7
Gohir.A01G206700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.6e-06 56.6 196 20.9
HanXRQChr05g0142771 Helianthus annuus HOM05D000001 ORTHO05D010091 3.6e-06 56.6 232 22.4
Nitab4.5_0002912g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.6e-06 56.6 166 24.7
Oeu023162.1 Olea europaea HOM05D000001 ORTHO05D010091 3.6e-06 56.6 247 20.6
Rhsim06G0152300 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.6e-06 56.6 220 20.9
BcaC05g29863 Brassica carinata HOM05D000001 ORTHO05D000003 4.7e-06 56.2 229 23.1
C05p62530 Brassica napus HOM05D000001 ORTHO05D010860 4.7e-06 56.2 139 25.2
CiPaw.11G068000 Carya illinoinensis HOM05D000001 ORTHO05D009790 4.7e-06 56.2 182 23.1
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 4.7e-06 56.2 135 31.1
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 4.7e-06 56.2 245 23.7
Glyma.10G001500 Glycine max HOM05D002479 ORTHO05D002675 4.7e-06 56.2 170 22.9
Gorai.002G240300 Gossypium raimondii HOM05D000001 ORTHO05D000003 4.7e-06 56.2 196 21.4
Hma1.2p1_0157F.1_g069410 Hydrangea macrophylla HOM05D003056 ORTHO05D036405 4.7e-06 56.2 92 28.3
Nitab4.5_0007407g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009229 4.7e-06 56.2 129 27.1
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 4.7e-06 56.2 160 22.5
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 4.7e-06 56.2 155 21.9
QL11p032336 Quercus lobata HOM05D003056 ORTHO05D003422 4.7e-06 56.2 171 26.9
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 4.7e-06 56.2 224 24.1
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 4.7e-06 56.2 206 23.3
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 4.7e-06 56.2 172 22.7
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.7e-06 56.2 110 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1663__1664 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-06 55.8 191 25.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 6.1e-06 55.8 197 23.4
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 6.1e-06 55.8 151 23.2
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 6.1e-06 55.8 132 28.0
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 6.1e-06 55.8 182 25.3
Phvul.001G122900 Phaseolus vulgaris HOM05D002649 ORTHO05D002838 6.1e-06 55.8 159 23.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 6.1e-06 55.8 251 20.3
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 6.1e-06 55.8 111 29.7
Sp3g03600 Schrenkiella parvula HOM05D000001 ORTHO05D010860 6.1e-06 55.8 156 25.0
Aa31LG5G14090 Aethionema arabicum HOM05D000001 ORTHO05D000003 8.0e-06 55.5 191 28.3
Aqoxy5G01457 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 8.0e-06 55.5 201 24.9
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 8.0e-06 55.5 208 23.1
Ciclev10014595m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.0e-06 55.5 241 24.5
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 8.0e-06 55.5 115 33.0
Gohir.D02G205900 Gossypium hirsutum HOM05D003056 ORTHO05D003422 8.0e-06 55.5 134 27.6
Gorai.005G233300 Gossypium raimondii HOM05D003056 ORTHO05D003422 8.0e-06 55.5 134 27.6
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 8.0e-06 55.5 222 20.3
Rhsim09G0002500 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.0e-06 55.5 148 27.0
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 8.0e-06 55.5 172 22.7


User provided reference genes

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