Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G28820 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.1e-93 346.7 173 100.0
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 3.6e-41 172.2 235 45.1
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 1.2e-36 157.1 231 43.7
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 5.9e-36 154.8 231 42.9
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 5.9e-36 154.8 231 42.9
AL4G17900 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.1e-34 150.6 207 46.4
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 1.4e-34 150.2 231 42.0
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-34 150.2 231 42.0
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 1.4e-34 150.2 231 42.0
AL4G17660 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 3.2e-34 149.1 206 46.1
Carub.0006s2679 Capsella rubella HOM05D001678 ORTHO05D001698 7.4e-31 137.9 156 51.3
BcaB01g02681 Brassica carinata HOM05D001678 ORTHO05D001698 1.1e-29 134.0 231 39.8
Carub.0001s3425 Capsella rubella HOM05D001678 ORTHO05D001698 1.4e-29 133.7 175 45.7
BraA01t03239Z Brassica rapa HOM05D001678 ORTHO05D001698 7.7e-28 127.9 232 34.5
BraA10t43304Z Brassica rapa HOM05D001678 ORTHO05D001698 7.7e-28 127.9 211 34.6
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 7.7e-28 127.9 237 35.4
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 7.7e-28 127.9 237 35.4
A10p12020 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-26 124.0 213 33.8
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 3.2e-26 122.5 190 38.9
BolC3t16754H Brassica oleracea HOM05D001678 ORTHO05D001698 4.7e-25 118.6 232 32.8
Carub.0004s0707 Capsella rubella HOM05D001678 ORTHO05D001698 5.2e-24 115.2 172 40.7
Thhalv10023821m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 5.2e-24 115.2 209 35.4
Carub.0006s3595 Capsella rubella HOM05D001678 ORTHO05D001698 1.1e-23 114.0 243 30.5
Carub.0008s1510 Capsella rubella HOM05D001678 ORTHO05D001698 1.1e-23 114.0 243 30.5
Thhalv10029423m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.1e-23 114.0 226 33.6
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-23 113.2 231 31.6
BraA09t39310Z Brassica rapa HOM05D001678 ORTHO05D001698 2.0e-23 113.2 231 31.6
AT5G27260 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 9.7e-23 110.9 225 36.0
BcaC06g34160 Brassica carinata HOM05D001678 ORTHO05D001698 4.8e-22 108.6 140 47.9
A03p43320 Brassica napus HOM05D001678 ORTHO05D001698 6.3e-22 108.2 195 34.9
BolC5t31786H Brassica oleracea HOM05D001678 ORTHO05D001698 6.3e-22 108.2 232 32.3
Thhalv10022272m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 8.2e-22 107.8 232 32.3
AT2G29880 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.8e-21 106.7 229 31.4
C07p32060 Brassica napus HOM05D001678 ORTHO05D001698 2.4e-21 106.3 147 46.9
BolC3t20376H Brassica oleracea HOM05D001678 ORTHO05D001698 1.2e-20 104.0 232 30.6
Carub.0011s0001 Capsella rubella HOM05D001678 ORTHO05D001698 1.2e-20 104.0 253 31.2
C09p07340 Brassica napus HOM05D001678 ORTHO05D001698 5.0e-19 98.6 180 35.6
Thhalv10005278m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.1e-18 97.4 215 30.2
Thhalv10029159m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.1e-18 97.4 222 31.1
Prupe.1G130600 Prunus persica HOM05D001678 ORTHO05D001698 3.2e-18 95.9 184 34.2
Thhalv10027019m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 9.4e-18 94.4 260 29.2
Sp6g02750 Schrenkiella parvula HOM05D001678 ORTHO05D001698 9.4e-18 94.4 254 28.7
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.6e-17 93.6 240 29.2
A04p22040 Brassica napus HOM05D001678 ORTHO05D001698 6.1e-17 91.7 65 72.3
C09p55800 Brassica napus HOM05D001678 ORTHO05D001698 6.1e-17 91.7 65 72.3
AL4G17920 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 8.0e-17 91.3 158 40.5
Carub.0001s3536 Capsella rubella HOM05D001678 ORTHO05D001698 1.4e-16 90.5 181 32.6
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 1.4e-16 90.5 253 27.7
Carub.0006s2633 Capsella rubella HOM05D001678 ORTHO05D001698 2.3e-16 89.7 135 43.0
Thhalv10029365m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 3.0e-16 89.4 195 34.4
BolC3t21566H Brassica oleracea HOM05D001678 ORTHO05D001698 5.2e-16 88.6 223 31.8
BolC2t11022H Brassica oleracea HOM05D001678 ORTHO05D001698 6.8e-16 88.2 203 35.0
BraA04t16704Z Brassica rapa HOM05D001678 ORTHO05D001698 1.2e-15 87.4 227 30.4
BraA05t21006Z Brassica rapa HOM05D001678 ORTHO05D001698 1.2e-15 87.4 227 30.4
BolC9t56511H Brassica oleracea HOM05D001678 ORTHO05D001698 2.6e-15 86.3 227 30.0
Lj1A169T8 Lonicera japonica HOM05D001678 ORTHO05D001698 2.6e-15 86.3 177 33.9
C01p37120 Brassica napus HOM05D001678 ORTHO05D001698 3.4e-15 85.9 205 29.3
BolC1t03676H Brassica oleracea HOM05D001678 ORTHO05D001698 3.4e-15 85.9 205 29.3
A01p29340 Brassica napus HOM05D001678 ORTHO05D001698 4.4e-15 85.5 205 29.3
BraA01t03066Z Brassica rapa HOM05D001678 ORTHO05D001698 4.4e-15 85.5 205 29.3
Thhalv10010996m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 4.4e-15 85.5 171 31.6
BcaC09g49863 Brassica carinata HOM05D001678 ORTHO05D001698 7.5e-15 84.7 184 30.4
FAN14G3339 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.7e-14 83.6 254 28.0
Sp2g04200 Schrenkiella parvula HOM05D001678 ORTHO05D001698 1.7e-14 83.6 213 29.6
C07p10100 Brassica napus HOM05D001678 ORTHO05D001698 2.2e-14 83.2 121 37.2
BcaC01g04115 Brassica carinata HOM05D001678 ORTHO05D001698 2.8e-14 82.8 161 32.9
FvH4_6g20420 Fragaria vesca HOM05D000034 ORTHO05D001698 2.8e-14 82.8 253 28.1
Lj2A433T12 Lonicera japonica HOM05D001678 ORTHO05D001698 3.7e-14 82.4 198 29.3
Carub.0004s0720 Capsella rubella HOM05D001678 ORTHO05D001698 4.8e-14 82.0 170 31.8
AL8G38260 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 8.3e-14 81.3 81 51.9
FAN13G1605 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.3e-14 81.3 241 28.6
A09p28080 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-13 80.9 182 35.7
A01p29330 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-13 80.5 208 28.4
BraA01t03065Z Brassica rapa HOM05D001678 ORTHO05D001698 1.4e-13 80.5 208 28.4
FAN12G1326 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.4e-13 79.7 229 26.2
Prupe.1G229800 Prunus persica HOM05D001678 ORTHO05D001698 2.4e-13 79.7 250 26.0
BcaB08g36227 Brassica carinata HOM05D001678 ORTHO05D001698 3.1e-13 79.3 81 44.4
C01p37100 Brassica napus HOM05D001678 ORTHO05D001698 9.1e-13 77.8 187 30.5
BolC1t03674H Brassica oleracea HOM05D001678 ORTHO05D001698 9.1e-13 77.8 187 30.5
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 9.1e-13 77.8 218 31.2
AT1G30140 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.2e-12 77.4 91 47.3
A01p28360 Brassica napus HOM05D001678 ORTHO05D001698 3.5e-12 75.9 79 57.0
Prupe.1G170700 Prunus persica HOM05D001678 ORTHO05D001698 3.5e-12 75.9 253 26.1
C06p06690 Brassica napus HOM05D001678 ORTHO05D001698 4.5e-12 75.5 81 46.9
BolC2t09580H Brassica oleracea HOM05D001678 ORTHO05D001698 4.5e-12 75.5 81 46.9
C07p02270 Brassica napus HOM05D001678 ORTHO05D001698 5.9e-12 75.1 199 30.2
BolC7t40637H Brassica oleracea HOM05D001678 ORTHO05D001698 5.9e-12 75.1 199 30.2
Lj3C1037T5 Lonicera japonica HOM05D001678 ORTHO05D001698 5.9e-12 75.1 227 28.2
AL2G16050 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 7.7e-12 74.7 212 27.8
BolC9t53596H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-12 74.7 98 41.8
FAN23G1752 Fragaria x ananassa HOM05D001678 ORTHO05D001698 7.7e-12 74.7 220 28.6
CARHR052440 Cardamine hirsuta HOM05D001678 ORTHO05D001698 1.0e-11 74.3 219 27.4
Prupe.4G168300 Prunus persica HOM05D001678 ORTHO05D001698 1.0e-11 74.3 253 25.7
BolC2t09582H Brassica oleracea HOM05D001678 ORTHO05D001698 1.7e-11 73.6 164 30.5
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 6.5e-11 71.6 213 27.2
Prupe.8G061600 Prunus persica HOM05D001678 ORTHO05D001698 6.5e-11 71.6 216 25.5
FvH4_2g00551 Fragaria vesca HOM05D001678 ORTHO05D001698 1.9e-10 70.1 237 29.1
FAN12G3116 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.5e-10 69.7 215 25.6
BolC2t07565H Brassica oleracea HOM05D001678 ORTHO05D001698 3.2e-10 69.3 211 28.4
FAN02G2409 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.2e-10 68.9 225 25.8
AL5G20810 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 9.4e-10 67.8 81 40.7
BolC6t36822H Brassica oleracea HOM05D001678 ORTHO05D001698 9.4e-10 67.8 76 44.7
Atru.chr6.779 Acer truncatum HOM05D001678 ORTHO05D001698 1.2e-09 67.4 230 27.0
C05p38790 Brassica napus HOM05D001678 ORTHO05D001698 1.2e-09 67.4 199 29.1
BolC5t32619H Brassica oleracea HOM05D001678 ORTHO05D001698 1.2e-09 67.4 199 29.1
Oeu051357.1 Olea europaea HOM05D001678 ORTHO05D001698 1.2e-09 67.4 92 39.1
Atru.chr13.2422 Acer truncatum HOM05D001678 ORTHO05D001698 1.6e-09 67.0 257 22.6
MD16G1269500 Malus domestica HOM05D001678 ORTHO05D001698 1.6e-09 67.0 113 35.4
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 2.7e-09 66.2 93 39.8
BcaC05g27161 Brassica carinata HOM05D001678 ORTHO05D001698 2.7e-09 66.2 82 45.1
AL1G65810 Arabidopsis lyrata HOM05D000034 ORTHO05D001698 3.6e-09 65.9 80 38.8
Prupe.2G168600 Prunus persica HOM05D001678 ORTHO05D001698 3.6e-09 65.9 266 23.3
A05p21020 Brassica napus HOM05D001678 ORTHO05D001698 4.7e-09 65.5 89 39.3
AT5G35540 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.0e-08 64.3 151 32.5
BcaC04g21001 Brassica carinata HOM05D001678 ORTHO05D001698 1.0e-08 64.3 89 38.2
C05p30510 Brassica napus HOM05D001678 ORTHO05D032997 1.0e-08 64.3 82 43.9
C09p36790 Brassica napus HOM05D001678 ORTHO05D001698 1.0e-08 64.3 89 38.2
A08p16470 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-08 63.9 89 38.2
C05p18830 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-08 63.9 200 27.5
BolC7t40636H Brassica oleracea HOM05D001678 ORTHO05D001698 1.4e-08 63.9 168 28.6
Carub.0002s1800 Capsella rubella HOM05D001678 ORTHO05D001698 1.4e-08 63.9 42 66.7
C07p02260 Brassica napus HOM05D001678 ORTHO05D001698 1.8e-08 63.5 168 28.6
FAN08G3647 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.8e-08 63.5 127 32.3
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.8e-08 63.5 127 32.3
MD03G1212300 Malus domestica HOM05D001678 ORTHO05D001698 1.8e-08 63.5 87 40.2
RcHm_v2.0_Chr6g0297421 Rosa chinensis HOM05D001678 ORTHO05D001698 1.8e-08 63.5 96 39.6
SGA_v2.0_scaffold296G47542 Striga asiatica HOM05D001678 ORTHO05D001698 1.8e-08 63.5 236 25.0
Atru.chr6.809 Acer truncatum HOM05D001678 ORTHO05D001698 2.3e-08 63.2 92 39.1
AL1G65820 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.3e-08 63.2 56 51.8
BraA07t28130Z Brassica rapa HOM05D001678 ORTHO05D001698 2.3e-08 63.2 91 40.7
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 2.3e-08 63.2 242 24.4
SGA_v2.0_scaffold27G11443 Striga asiatica HOM05D001678 ORTHO05D001698 2.3e-08 63.2 234 25.2
SGA_v2.0_scaffold68G22889 Striga asiatica HOM05D001678 ORTHO05D001698 2.3e-08 63.2 234 25.2
MD05G1104000 Malus domestica HOM05D001678 ORTHO05D001698 3.0e-08 62.8 107 38.3
FAN26G0826 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.2e-08 62.0 94 37.2
FAN26G1256 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.2e-08 62.0 94 37.2
Glyma.10G128600 Glycine max HOM05D001678 ORTHO05D001698 5.2e-08 62.0 235 24.3
Prupe.7G073100 Prunus persica HOM05D001678 ORTHO05D001698 5.2e-08 62.0 102 34.3
RcHm_v2.0_Chr5g0019361 Rosa chinensis HOM05D001678 ORTHO05D001698 5.2e-08 62.0 90 41.1
AL1G56710 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 6.8e-08 61.6 89 37.1
FvH4_2g33311 Fragaria vesca HOM05D001678 ORTHO05D001698 8.8e-08 61.2 120 30.0
FvH4_6g24700 Fragaria vesca HOM05D001678 ORTHO05D001698 8.8e-08 61.2 120 31.7
Thhalv10015362m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.5e-07 60.5 102 36.3
FAN03G1731 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.5e-07 60.5 127 30.7
Prupe.3G105400 Prunus persica HOM05D001678 ORTHO05D001698 1.5e-07 60.5 248 23.8
FAN24G2506 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.6e-07 59.7 120 29.2
Oeu061131.1 Olea europaea HOM05D001678 ORTHO05D001698 2.6e-07 59.7 173 27.2
SGA_v2.0_scaffold2614G54162 Striga asiatica HOM05D001678 ORTHO05D001698 2.6e-07 59.7 234 24.8
Atru.chr3.1756 Acer truncatum HOM05D001678 ORTHO05D001698 3.4e-07 59.3 83 39.8
RcHm_v2.0_Chr4g0409291 Rosa chinensis HOM05D001678 ORTHO05D001698 3.4e-07 59.3 93 36.6
Glyma.10G200900 Glycine max HOM05D001678 ORTHO05D001698 4.4e-07 58.9 251 22.7
FAN04G2958 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.7e-07 58.5 77 39.0
Glyma.01G111800 Glycine max HOM05D001678 ORTHO05D001698 5.7e-07 58.5 240 23.8
Atru.chr5.2051 Acer truncatum HOM05D001678 ORTHO05D001698 7.5e-07 58.2 108 36.1
BolC5t31169H Brassica oleracea HOM05D001678 ORTHO05D001698 7.5e-07 58.2 41 61.0
RcHm_v2.0_Chr6g0281401 Rosa chinensis HOM05D001678 ORTHO05D001698 7.5e-07 58.2 93 36.6
C09p41880 Brassica napus HOM05D001678 ORTHO05D001698 9.8e-07 57.8 145 30.3
BolC4t23209H Brassica oleracea HOM05D001678 ORTHO05D001698 9.8e-07 57.8 42 61.9
BolC9t57074H Brassica oleracea HOM05D001678 ORTHO05D001698 9.8e-07 57.8 145 30.3
FAN23G0320 Fragaria x ananassa HOM05D001678 ORTHO05D001698 9.8e-07 57.8 222 28.4
Atru.chr3.1295 Acer truncatum HOM05D001678 ORTHO05D001698 1.3e-06 57.4 42 54.8
Atru.chr4.878 Acer truncatum HOM05D001678 ORTHO05D001698 1.3e-06 57.4 103 35.9
Atru.chr5.2760 Acer truncatum HOM05D001678 ORTHO05D001698 1.3e-06 57.4 83 38.6
Glyma.10G131100 Glycine max HOM05D001678 ORTHO05D001698 1.3e-06 57.4 246 23.6
Lj4C317T2 Lonicera japonica HOM05D000034 ORTHO05D001698 1.3e-06 57.4 102 34.3
Oeu035952.1 Olea europaea HOM05D001678 ORTHO05D001698 1.3e-06 57.4 202 26.2
Lj3C974T6 Lonicera japonica HOM05D000034 ORTHO05D001698 1.7e-06 57.0 102 34.3
C05p25710 Brassica napus HOM05D001678 ORTHO05D001698 2.2e-06 56.6 42 61.9
Glyma.13G184400 Glycine max HOM05D001678 ORTHO05D001698 2.8e-06 56.2 252 23.0
Glyma.17G148300 Glycine max HOM05D001678 ORTHO05D001698 2.8e-06 56.2 239 23.0
Glyma.07G133600 Glycine max HOM05D001678 ORTHO05D001698 3.7e-06 55.8 244 23.0
BcaNung00414 Brassica carinata HOM05D001678 ORTHO05D001698 4.9e-06 55.5 159 25.8
FAN08G2072 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.9e-06 55.5 92 33.7
Glyma.11G167500 Glycine max HOM05D001678 ORTHO05D001698 4.9e-06 55.5 252 22.6
Glyma.15G150600 Glycine max HOM05D001678 ORTHO05D001698 6.3e-06 55.1 252 23.0
Oeu059447.1 Olea europaea HOM05D001678 ORTHO05D001698 6.3e-06 55.1 80 35.0
PSO764G0063 Papaver somniferum HOM05D001678 ORTHO05D001698 6.3e-06 55.1 221 23.5
Atru.chr2.502 Acer truncatum HOM05D001678 ORTHO05D001698 8.3e-06 54.7 126 32.5
FAN13G0399 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.3e-06 54.7 64 42.2
Glyma.01G110000 Glycine max HOM05D001678 ORTHO05D001698 8.3e-06 54.7 252 23.0
Glyma.06G095100 Glycine max HOM05D001678 ORTHO05D001698 8.3e-06 54.7 251 23.1
Glyma.14G191800 Glycine max HOM05D001678 ORTHO05D001698 8.3e-06 54.7 242 23.1
RcHm_v2.0_Chr5g0052631 Rosa chinensis HOM05D001678 ORTHO05D001698 8.3e-06 54.7 76 38.2
SGA_v2.0_scaffold612G53189 Striga asiatica HOM05D001678 ORTHO05D001698 8.3e-06 54.7 82 32.9


User provided reference genes

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