Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.2e-307 1058.1 540 100.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 7.4e-279 963.4 537 91.6
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 6.1e-265 917.1 538 85.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 8.0e-265 916.8 541 86.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.3e-261 904.0 542 84.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.0e-252 875.5 543 82.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 9.8e-247 856.7 538 80.1
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.8e-246 855.1 538 79.6
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.1e-242 843.2 552 77.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.6e-241 838.2 541 78.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.4e-237 825.5 481 83.6
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.6e-236 821.2 538 77.3
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.9e-236 820.8 538 77.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.0e-235 818.5 477 83.0
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.0e-235 818.5 477 83.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.5e-234 816.2 477 82.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.3e-234 815.1 476 83.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 4.3e-234 814.7 477 82.6
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-233 812.0 539 76.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.6e-231 805.4 548 75.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.2e-213 745.3 557 68.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.9e-211 738.4 556 66.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-210 736.5 492 72.8
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.6e-210 734.6 568 65.8
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.6e-209 733.0 490 72.2
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.6e-209 731.9 473 73.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.8e-208 729.6 557 65.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.2e-208 728.0 475 73.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 5.2e-208 728.0 561 66.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.4e-207 724.9 496 69.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.6e-207 724.2 491 69.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 9.9e-207 723.8 498 70.9
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.7e-206 723.0 550 67.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 6.4e-206 721.1 552 67.8
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 6.4e-206 721.1 550 66.9
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.4e-205 719.2 550 65.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.2e-205 718.4 476 71.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 5.4e-205 718.0 491 70.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.2e-204 716.8 554 66.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.0e-203 712.2 557 65.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.3e-202 707.6 553 63.8
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.1e-201 706.1 474 70.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-200 703.4 490 68.8
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.4e-200 703.4 472 71.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.8e-200 703.0 490 69.8
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.8e-200 703.0 557 65.0
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.8e-200 703.0 490 69.6
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.4e-200 702.6 492 69.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.3e-200 701.4 471 69.9
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 6.9e-200 701.0 559 64.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 6.9e-200 701.0 550 64.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 4.5e-199 698.4 541 64.5
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.5e-199 698.4 465 71.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.9e-198 695.7 514 67.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.9e-198 695.7 552 65.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.8e-198 695.3 554 63.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 6.4e-198 694.5 527 66.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.4e-197 693.3 566 63.6
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.9e-197 693.0 478 69.5
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.2e-197 692.2 476 70.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 7.1e-197 691.0 504 66.5
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 7.1e-197 691.0 565 62.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.5e-196 688.7 564 63.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.0e-195 687.2 518 66.6
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.9e-195 685.3 464 69.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.5e-194 682.6 540 63.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.5e-194 682.6 584 61.1
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.3e-194 681.8 571 62.3
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.3e-193 680.2 461 70.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.8e-193 679.1 553 64.2
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.7e-193 678.7 567 63.7
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.8e-192 676.4 566 62.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.1e-192 675.6 552 64.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.0e-192 675.2 527 65.1
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-191 673.3 549 62.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.0e-191 672.9 562 62.5
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.6e-191 671.0 489 68.5
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.9e-191 670.6 469 68.2
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.4e-189 666.8 476 66.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-189 666.4 485 67.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.2e-189 665.6 582 59.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.2e-189 665.2 514 64.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.3e-189 664.1 499 65.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.3e-189 664.1 514 64.8
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-188 663.7 554 62.6
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.7e-188 662.5 571 61.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.7e-188 662.5 567 61.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.3e-187 659.4 573 60.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.0e-187 659.1 458 69.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-187 658.7 513 64.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.9e-186 656.4 492 64.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.3e-186 655.6 554 61.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.6e-186 654.1 471 65.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-185 653.7 542 63.1
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.6e-185 653.3 469 67.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.8e-185 652.5 490 65.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.8e-185 651.7 547 59.8
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.1e-184 650.6 540 61.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-184 650.2 621 58.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.8e-184 649.8 476 66.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.0e-184 648.7 469 66.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 5.3e-184 648.3 499 64.3
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.0e-183 646.4 540 60.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 7.6e-183 644.4 472 67.2
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.2e-182 642.9 457 67.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 6.5e-182 641.3 553 61.1
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.2e-181 638.6 514 63.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.5e-180 635.6 542 61.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-176 623.2 691 50.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 5.3e-176 621.7 471 64.8
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 3.2e-173 612.5 519 59.2
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 4.1e-168 595.5 603 54.6
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.6e-167 592.8 460 62.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 5.5e-165 585.1 547 58.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.8e-161 572.8 556 56.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.0e-155 554.3 361 74.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.2e-155 552.0 390 69.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-152 544.3 364 71.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.2e-151 540.8 460 58.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 8.0e-148 528.1 555 53.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 9.1e-144 514.6 469 53.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.2e-140 504.2 361 68.1
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.1e-140 501.9 491 54.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.3e-139 500.0 463 54.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-136 490.7 520 50.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.0e-134 482.3 362 66.3
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.8e-131 471.9 379 63.3
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.9e-126 456.4 324 68.8
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.5e-125 453.4 395 59.7
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.1e-116 423.7 289 69.2
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.5e-106 391.0 476 45.6
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.7e-105 387.5 483 45.1
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-104 384.8 281 64.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.3e-102 377.9 365 55.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 4.3e-101 372.9 241 73.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-93 348.2 307 61.2
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 8.1e-92 342.0 234 70.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 5.3e-91 339.3 213 75.1
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 6.9e-91 339.0 224 72.3
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-90 337.8 217 72.8
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 3.4e-90 336.7 454 41.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-86 323.2 273 61.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-85 321.6 275 57.5
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 9.6e-85 318.5 287 56.1
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.9e-77 294.3 199 69.3
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.9e-75 285.8 229 63.3
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.5e-74 284.6 470 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 4.6e-71 273.1 271 49.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 5.8e-66 256.1 188 68.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.5e-64 250.8 499 34.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-59 235.3 282 47.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.5e-57 226.1 184 63.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.5e-53 214.2 171 59.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.9e-49 200.7 284 43.7
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.2e-48 197.2 169 59.2
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-41 175.3 155 58.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.2e-41 174.5 136 64.7
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.9e-41 174.1 112 75.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 6.5e-41 172.9 351 37.3
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 9.4e-40 169.1 365 35.1
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.1e-39 167.9 125 61.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 6.7e-38 162.9 124 61.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.2e-36 156.0 133 56.4
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 9.7e-29 132.5 81 71.6
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-28 131.7 88 68.2
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 3.7e-28 130.6 102 64.7
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.1e-27 127.1 76 76.3
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.7e-26 124.4 183 42.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.9e-26 123.2 80 68.8
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.9e-24 118.2 75 74.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-22 112.1 64 79.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.3e-22 111.3 94 57.4
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-20 105.1 65 69.2
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 2.2e-20 104.8 110 62.7
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-19 102.4 84 57.1
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.8e-19 101.7 88 59.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.1e-19 100.5 64 68.8
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-18 99.0 78 53.8
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 4.5e-18 97.1 80 58.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.5e-16 91.3 70 57.1
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.0e-14 84.3 64 57.8
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 4.0e-14 84.0 48 81.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-11 75.9 159 35.8
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 5.0e-09 67.0 51 60.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 6.6e-09 66.6 48 64.6
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-08 65.9 111 38.7
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-08 65.1 155 32.3


User provided reference genes

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