Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27130 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 2.6e-172 608.6 307 100.0
Carub.0006s2537 Capsella rubella HOM05D010067 ORTHO05D012286 9.6e-82 307.8 254 70.5
AL5G21870 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 2.7e-68 263.1 321 53.3
Thhalv10015516m.g Eutrema salsugineum HOM05D010067 ORTHO05D012286 8.2e-65 251.5 314 52.9
AL5G21590 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 3.1e-64 249.6 322 51.6
AT1G48150 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 4.8e-57 225.7 285 51.6
Carub.0005s0962 Capsella rubella HOM05D010067 ORTHO05D012286 8.5e-54 214.9 305 45.9
AL4G20910 Arabidopsis lyrata HOM05D010067 ORTHO05D012286 2.3e-51 206.8 315 45.4
BraA02t08829Z Brassica rapa HOM05D010067 ORTHO05D012286 7.4e-50 201.8 298 46.3
A02p38510 Brassica napus HOM05D010067 ORTHO05D012286 7.0e-48 195.3 298 46.0
BolC2t11856H Brassica oleracea HOM05D010067 ORTHO05D012286 9.1e-48 194.9 298 46.3
BcaC03g17772 Brassica carinata HOM05D010067 ORTHO05D012286 2.6e-47 193.4 298 46.3
C02p57880 Brassica napus HOM05D010067 ORTHO05D012286 3.5e-47 193.0 298 46.3
AT1G50780 Arabidopsis thaliana HOM05D010067 ORTHO05D012286 3.1e-40 169.9 292 43.5
Aa31LG3G4380 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.5e-26 124.4 205 42.4
Aa31LG3G18740 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.7e-25 120.9 209 43.5
Aa31LG3G4360 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.1e-24 118.2 254 35.0
Aa31LG4G13670 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.4e-24 117.9 134 50.0
Aa31LG4G13760 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.2e-23 114.8 130 49.2
Aa31sc24G40 Aethionema arabicum HOM05D010067 ORTHO05D012286 2.3e-22 110.5 132 49.2
Aa31LG3G620 Aethionema arabicum HOM05D010067 ORTHO05D012286 9.5e-21 105.1 145 45.5
Carub.0002s1331 Capsella rubella HOM05D006070 ORTHO05D009119 1.8e-16 90.9 119 42.9
THA.LOC104823173 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 5.9e-15 85.9 136 45.6
Carub.0004s0822 Capsella rubella HOM05D006070 ORTHO05D009119 1.0e-14 85.1 119 39.5
AL6G40380 Arabidopsis lyrata HOM05D010067 ORTHO05D080180 1.7e-14 84.3 121 53.7
THA.LOC104820177 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.1e-13 81.6 163 36.2
Carub.0002s1330 Capsella rubella HOM05D006070 ORTHO05D009119 1.5e-13 81.3 102 44.1
Thhalv10023175m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 1.5e-13 81.3 119 41.2
BraA09t37345Z Brassica rapa HOM05D006070 ORTHO05D009119 1.9e-13 80.9 140 35.7
A09p17140 Brassica napus HOM05D006070 ORTHO05D009119 3.3e-13 80.1 135 36.3
THA.LOC104810605 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 3.3e-13 80.1 149 36.9
Aa31LG3G4370 Aethionema arabicum HOM05D010067 ORTHO05D012286 4.3e-13 79.7 104 41.3
AL2G15570 Arabidopsis lyrata HOM05D006070 ORTHO05D009119 4.3e-13 79.7 134 38.1
Thhalv10015623m.g Eutrema salsugineum HOM05D006070 ORTHO05D020096 5.6e-13 79.3 123 38.2
THA.LOC104810603 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.2e-12 78.2 139 37.4
THA.LOC104810604 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.2e-12 78.2 139 37.4
BcaC08g43039 Brassica carinata HOM05D006070 ORTHO05D009119 1.6e-12 77.8 286 26.2
BcaC08g43048 Brassica carinata HOM05D006070 ORTHO05D009119 1.6e-12 77.8 286 26.2
BcaB07g31239 Brassica carinata HOM05D006070 ORTHO05D009119 3.6e-12 76.6 135 36.3
C06p02990 Brassica napus HOM05D006070 ORTHO05D009119 3.6e-12 76.6 285 24.6
BolC6t35422H Brassica oleracea HOM05D006070 ORTHO05D009119 3.6e-12 76.6 285 24.6
BcaB07g33746 Brassica carinata HOM05D006070 ORTHO05D009119 4.7e-12 76.3 184 28.8
BcaC04g22285 Brassica carinata HOM05D006070 ORTHO05D009119 4.7e-12 76.3 135 37.0
C09p21210 Brassica napus HOM05D006070 ORTHO05D009119 4.7e-12 76.3 135 37.0
AT5G38620 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 6.2e-12 75.9 172 33.1
BcaNung06358 Brassica carinata HOM05D006070 ORTHO05D009119 6.2e-12 75.9 164 35.4
C09p72150 Brassica napus HOM05D006070 ORTHO05D020096 6.2e-12 75.9 150 37.3
BolC6t35592H Brassica oleracea HOM05D006070 ORTHO05D009119 6.2e-12 75.9 164 35.4
BolC9t59959H Brassica oleracea HOM05D006070 ORTHO05D020096 6.2e-12 75.9 150 37.3
A08p03550 Brassica napus HOM05D006070 ORTHO05D009119 8.0e-12 75.5 180 32.8
C06p04630 Brassica napus HOM05D006070 ORTHO05D009119 8.0e-12 75.5 184 34.2
Cpa.g.sc43.109 Carica papaya HOM05D006070 ORTHO05D009119 8.0e-12 75.5 153 32.7
A08p03790 Brassica napus HOM05D006070 ORTHO05D009119 1.0e-11 75.1 180 31.7
BolC7t44495H Brassica oleracea HOM05D006070 ORTHO05D009119 1.0e-11 75.1 162 35.8
Carub.0007s2769 Capsella rubella HOM05D006070 ORTHO05D009119 1.0e-11 75.1 181 28.7
THA.LOC104819503 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.0e-11 75.1 134 32.1
THA.LOC104819512 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 1.0e-11 75.1 134 32.1
AT1G60920 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 1.4e-11 74.7 135 37.8
Aa31LG4G14150 Aethionema arabicum HOM05D010067 ORTHO05D012286 1.8e-11 74.3 134 40.3
A10p31460 Brassica napus HOM05D006070 ORTHO05D020096 1.8e-11 74.3 150 37.3
BraA08t32389Z Brassica rapa HOM05D006070 ORTHO05D009119 1.8e-11 74.3 180 32.2
BraA10t45192Z Brassica rapa HOM05D006070 ORTHO05D020096 1.8e-11 74.3 150 37.3
Cpa.g.sc103.82 Carica papaya HOM05D006070 ORTHO05D009119 1.8e-11 74.3 166 32.5
BcaB07g33520 Brassica carinata HOM05D006070 ORTHO05D009119 2.3e-11 73.9 184 28.3
C06p03100 Brassica napus HOM05D006070 ORTHO05D009119 2.3e-11 73.9 179 34.1
BolC6t35429H Brassica oleracea HOM05D006070 ORTHO05D009119 2.3e-11 73.9 179 34.1
BcaC07g37029 Brassica carinata HOM05D006070 ORTHO05D009119 3.1e-11 73.6 123 39.8
A06p04480 Brassica napus HOM05D006070 ORTHO05D009119 3.1e-11 73.6 179 30.2
C08p03750 Brassica napus HOM05D006070 ORTHO05D009119 3.1e-11 73.6 123 39.8
C08p03960 Brassica napus HOM05D006070 ORTHO05D009119 3.1e-11 73.6 123 39.8
BolC8t47189H Brassica oleracea HOM05D006070 ORTHO05D009119 3.1e-11 73.6 123 39.8
Cpa.g.sc1046.4 Carica papaya HOM05D006070 ORTHO05D009119 3.1e-11 73.6 163 32.5
Thhalv10023871m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 3.1e-11 73.6 203 31.0
BcaC04g22292 Brassica carinata HOM05D006070 ORTHO05D009119 4.0e-11 73.2 136 38.2
C09p21070 Brassica napus HOM05D006070 ORTHO05D009119 4.0e-11 73.2 136 38.2
BolC9t55008H Brassica oleracea HOM05D006070 ORTHO05D009119 4.0e-11 73.2 136 38.2
BraA06t23652Z Brassica rapa HOM05D006070 ORTHO05D009119 4.0e-11 73.2 178 30.9
THA.LOC104819459 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 4.0e-11 73.2 183 32.2
BcaC06g32177 Brassica carinata HOM05D006070 ORTHO05D020096 5.2e-11 72.8 248 31.5
Thhalv10023813m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 5.2e-11 72.8 179 33.0
THA.LOC104820129 Tarenaya hassleriana HOM05D006070 ORTHO05D009119 5.2e-11 72.8 117 44.4
BraA08t32408Z Brassica rapa HOM05D006070 ORTHO05D009119 6.8e-11 72.4 166 34.3
Sp5g22450 Schrenkiella parvula HOM05D006070 ORTHO05D020096 1.2e-10 71.6 163 33.7
BolC9t55023H Brassica oleracea HOM05D006070 ORTHO05D009119 1.5e-10 71.2 135 36.3
PSO210G5697 Papaver somniferum HOM05D000203 ORTHO05D000135 1.5e-10 71.2 196 32.7
AT5G49420 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 2.0e-10 70.9 199 32.2
AT1G46408 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 2.6e-10 70.5 135 37.0
AT5G04640 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 2.6e-10 70.5 104 41.3
AL2G15620 Arabidopsis lyrata HOM05D006070 ORTHO05D009119 3.4e-10 70.1 134 35.8
BcaB04g17059 Brassica carinata HOM05D006070 ORTHO05D009119 3.4e-10 70.1 163 31.3
CARHR058390 Cardamine hirsuta HOM05D006070 ORTHO05D009119 3.4e-10 70.1 170 32.9
BcaB04g17295 Brassica carinata HOM05D006070 ORTHO05D009119 9.8e-10 68.6 120 37.5
BcaB07g33759 Brassica carinata HOM05D006070 ORTHO05D009119 9.8e-10 68.6 169 28.4
CARHR059500 Cardamine hirsuta HOM05D006070 ORTHO05D009119 9.8e-10 68.6 233 29.6
PSO210G6024 Papaver somniferum HOM05D000203 ORTHO05D012050 9.8e-10 68.6 192 29.7
CARHR283580 Cardamine hirsuta HOM05D006070 ORTHO05D009119 1.3e-09 68.2 107 43.9
BcaB04g17293 Brassica carinata HOM05D006070 ORTHO05D009119 1.7e-09 67.8 219 28.8
BcaNung02584 Brassica carinata HOM05D006070 ORTHO05D009119 1.7e-09 67.8 173 33.5
C07p39720 Brassica napus HOM05D006070 ORTHO05D009119 1.7e-09 67.8 173 33.5
BraA09t37339Z Brassica rapa HOM05D006070 ORTHO05D009119 1.7e-09 67.8 172 31.4
Carub.0002s0435 Capsella rubella HOM05D006070 ORTHO05D009119 2.2e-09 67.4 136 33.8
BcaB04g17318 Brassica carinata HOM05D006070 ORTHO05D009119 2.9e-09 67.0 120 37.5
A09p17040 Brassica napus HOM05D006070 ORTHO05D009119 2.9e-09 67.0 172 31.4
CARHR221010 Cardamine hirsuta HOM05D006070 ORTHO05D009119 2.9e-09 67.0 119 37.8
PSO832G3896 Papaver somniferum HOM05D000203 ORTHO05D012050 2.9e-09 67.0 193 29.0
Sp1g36460 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.9e-09 67.0 118 38.1
Sp2g03710 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.9e-09 67.0 136 33.8
Sp2g03770 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.9e-09 67.0 136 33.8
Sp6g07320 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.9e-09 67.0 228 30.3
Ciclev10023422m.g Citrus clementina HOM05D006070 ORTHO05D009119 4.9e-09 66.2 192 28.1
Potri.006G258500 Populus trichocarpa HOM05D000203 ORTHO05D000135 4.9e-09 66.2 91 49.5
AT1G60880 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 6.4e-09 65.9 135 37.0
AT5G49490 Arabidopsis thaliana HOM05D006070 ORTHO05D009119 6.4e-09 65.9 121 34.7
Sp6g06330 Schrenkiella parvula HOM05D006070 ORTHO05D009119 8.3e-09 65.5 118 39.0
Carub.0008s0896 Capsella rubella HOM05D006070 ORTHO05D009119 1.1e-08 65.1 122 34.4
Thhalv10029256m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 1.9e-08 64.3 200 32.5
BolC7t44531H Brassica oleracea HOM05D006070 ORTHO05D009119 2.4e-08 63.9 117 38.5
CARHR116680 Cardamine hirsuta HOM05D006070 ORTHO05D009119 2.4e-08 63.9 136 36.0
Potri.006G258550 Populus trichocarpa HOM05D000203 ORTHO05D000135 2.4e-08 63.9 91 47.3
TAR636G2055 Trochodendron aralioides HOM05D000203 ORTHO05D000135 2.4e-08 63.9 168 32.7
BolC8t47175H Brassica oleracea HOM05D006070 ORTHO05D009119 3.2e-08 63.5 88 46.6
BcaC06g30712 Brassica carinata HOM05D006070 ORTHO05D009119 4.1e-08 63.2 131 35.1
Carub.0002s0441 Capsella rubella HOM05D006070 ORTHO05D009119 4.1e-08 63.2 135 33.3
PSO339G4623 Papaver somniferum HOM05D000203 ORTHO05D012050 4.1e-08 63.2 155 32.3
Potri.017G124000 Populus trichocarpa HOM05D000203 ORTHO05D000135 4.1e-08 63.2 91 47.3
BcaB04g17320 Brassica carinata HOM05D006070 ORTHO05D009119 7.0e-08 62.4 193 26.9
A06p38250 Brassica napus HOM05D006070 ORTHO05D009119 7.0e-08 62.4 117 37.6
BraA06t26740Z Brassica rapa HOM05D006070 ORTHO05D009119 7.0e-08 62.4 117 37.6
Cc09_g08870 Coffea canephora HOM05D000203 ORTHO05D000135 7.0e-08 62.4 114 36.8
Aqoxy7G03006 Aquilegia oxysepala HOM05D000203 ORTHO05D000135 1.6e-07 61.2 130 35.4
Potri.012G110100 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.6e-07 61.2 91 46.2
Cpa.g.sc173.32 Carica papaya HOM05D021832 ORTHO05D009119 2.0e-07 60.8 281 28.1
PSO339G6252 Papaver somniferum HOM05D000203 ORTHO05D012050 2.0e-07 60.8 150 30.7
Aqoxy3G04248 Aquilegia oxysepala HOM05D000203 ORTHO05D000135 2.7e-07 60.5 84 44.0
CARHR285170 Cardamine hirsuta HOM05D006070 ORTHO05D009119 2.7e-07 60.5 137 35.8
Cpa.g.sc173.25 Carica papaya HOM05D021832 ORTHO05D120906 2.7e-07 60.5 279 28.3
Sp2g19510 Schrenkiella parvula HOM05D006070 ORTHO05D009119 2.7e-07 60.5 111 33.3
BraA06t26769Z Brassica rapa HOM05D006070 ORTHO05D009119 3.5e-07 60.1 154 33.8
Haze_20105 Corylus avellana HOM05D000203 ORTHO05D000135 3.5e-07 60.1 90 46.7
Thhalv10029235m.g Eutrema salsugineum HOM05D006070 ORTHO05D009119 3.5e-07 60.1 167 31.7
TAR362G0500 Trochodendron aralioides HOM05D000203 ORTHO05D000135 3.5e-07 60.1 78 44.9
TAR362G0747 Trochodendron aralioides HOM05D000203 ORTHO05D000135 3.5e-07 60.1 78 44.9
PSO384G4243 Papaver somniferum HOM05D000203 ORTHO05D012050 4.6e-07 59.7 130 34.6
BcaB02g09104 Brassica carinata HOM05D006070 ORTHO05D009119 6.0e-07 59.3 79 44.3
BcaC02g09349 Brassica carinata HOM05D006070 ORTHO05D016789 6.0e-07 59.3 225 27.6
ECA238G3185 Erigeron canadensis HOM05D000203 ORTHO05D000135 6.0e-07 59.3 173 31.2
Hma1.2p1_0661F.1_g197930 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 6.0e-07 59.3 158 33.5
Hma1.2p1_1758F.1_g301153 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 6.0e-07 59.3 158 33.5
C07p39980 Brassica napus HOM05D006070 ORTHO05D009119 7.8e-07 58.9 171 30.4
Cfa020086 Carpinus fangiana HOM05D000203 ORTHO05D000135 7.8e-07 58.9 121 40.5
Dinv05644 Davidia involucrata HOM05D000203 ORTHO05D000135 7.8e-07 58.9 146 31.5
PSO384G0590 Papaver somniferum HOM05D000203 ORTHO05D012050 7.8e-07 58.9 150 29.3
PSO384G1221 Papaver somniferum HOM05D000203 ORTHO05D012050 7.8e-07 58.9 165 30.3
BolC4t25742H Brassica oleracea HOM05D006070 ORTHO05D016789 1.0e-06 58.5 159 30.2
Cpa.g.sc173.35 Carica papaya HOM05D021832 ORTHO05D118627 1.0e-06 58.5 282 27.3
PSO384G2895 Papaver somniferum HOM05D000203 ORTHO05D012050 1.0e-06 58.5 165 29.1
A06p38550 Brassica napus HOM05D006070 ORTHO05D009119 1.3e-06 58.2 154 34.4
Cpa.g.sc173.23 Carica papaya HOM05D021832 ORTHO05D118647 1.3e-06 58.2 279 28.0
ECA232G3204 Erigeron canadensis HOM05D000203 ORTHO05D000135 1.3e-06 58.2 85 45.9
Medtr1g075600 Medicago truncatula HOM05D000203 ORTHO05D000135 1.3e-06 58.2 82 46.3
PSO384G3182 Papaver somniferum HOM05D025184 ORTHO05D012050 1.3e-06 58.2 165 28.5
GSVIVG01021534001 Vitis vinifera HOM05D000203 ORTHO05D000135 1.3e-06 58.2 186 29.0
ECA233G5457 Erigeron canadensis HOM05D000203 ORTHO05D000135 1.7e-06 57.8 91 42.9
TAR285G0004 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.7e-06 57.8 80 41.2
Aqoxy7G03000 Aquilegia oxysepala HOM05D000203 ORTHO05D000135 2.3e-06 57.4 130 34.6
Manes.07G111400 Manihot esculenta HOM05D000203 ORTHO05D000135 2.3e-06 57.4 211 29.4
PSO384G2063 Papaver somniferum HOM05D000203 ORTHO05D012050 3.0e-06 57.0 168 29.8
PSO384G5130 Papaver somniferum HOM05D000203 ORTHO05D012050 3.0e-06 57.0 168 29.8
Psat6g223520 Pisum sativum HOM05D000203 ORTHO05D000135 3.0e-06 57.0 81 43.2
Rhsim11G0028800 Rhododendron simsii HOM05D000203 ORTHO05D000135 3.0e-06 57.0 163 30.7
Sabra06G0202000 Salix brachista HOM05D000203 ORTHO05D000135 3.0e-06 57.0 69 52.2
CSS0039657 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 3.9e-06 56.6 203 29.6
Peaxi162Scf00071g10117 Petunia axillaris HOM05D000203 ORTHO05D000135 3.9e-06 56.6 77 44.2
BraA04t16467Z Brassica rapa HOM05D006070 ORTHO05D016789 5.0e-06 56.2 135 32.6
PSO384G2113 Papaver somniferum HOM05D000203 ORTHO05D012050 5.0e-06 56.2 139 30.2
BcaC02g09331 Brassica carinata HOM05D006070 ORTHO05D016789 6.6e-06 55.8 82 42.7
BolC4t25721H Brassica oleracea HOM05D006070 ORTHO05D016789 6.6e-06 55.8 226 26.5
Psat6g223400 Pisum sativum HOM05D000203 ORTHO05D000135 6.6e-06 55.8 85 42.4
C04p41420 Brassica napus HOM05D006070 ORTHO05D016789 8.6e-06 55.5 82 41.5
Nn4g25572 Nelumbo nucifera HOM05D000203 ORTHO05D000135 8.6e-06 55.5 167 32.3


User provided reference genes

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